Detailed information of FUN_026200-T1 in Siderastrea siderea

Genomic Location: contig_25:5289606...5308032
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_026200-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR026081
all species →		FamilyDisrupted in schizophrenia 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14332
all species →		DISRUPTED IN SCHIZOPHRENIA 1 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0005813
all species →		Cellular ComponentcentrosomeInterproscan
GO:0005874
all species →		Cellular ComponentmicrotubuleInterproscan
GO:0045111
all species →		Cellular Componentintermediate filament cytoskeletonInterproscan
GO:0060271
all species →		Biological Processcilium assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_026200-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_026200-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
9TPM > 0
7Conditions
16.6Max TPM
1.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 0.20 4.09
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 1 0.33 6.67
holobiont · control.pH Control.temp 19 1 0.73 13.90
Whole organism 4 4 10.36 11.98
unannotated 1 1 10.91 10.91
live coral tissue/skeleton 1 1 16.61 16.61

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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