Gene detail

Detailed information of FUN_026273-T1 in Acropora pulchra

Genomic Location: ptg000020l:7041262...7055018
NR annotation: XP_044165941.1, uncharacterized protein LOC114957127 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_026273-T1

ATGATGTCACGATATGAAGTATCTGAACAAGCAGATGCAGTGAGGAAAATATTAAACATTACTCTGCTAGCAAGTGAATGGAAGTCATCAGCTGGTGGTTTGTCAACATTAAATAGGGAACTTGCAATTCATCTTTCACAGATACAAAATGTGAGAGTTTCACTATTGGTTCCAGAGGGCGCTTGTAATGATGAAGACAAAAGGGAGGCTAGAAGTTTTGGCATCAGTATTCTTGATGCAAAGGAATGTGTTGCTGTTGAACCTCTCCTTTGGTTGAGCAACCCACCTCAGGATCACAAAATAGATGTTATTGTTGGTCATGGTGTAAAACTTGCTCGTCAAGTTCAACTCATTAAAAGACATGTGCAATTCCAAAATTGCAAGTGGGTACATGTGGTCCATACTGAACCTGAAGACCTTGGCAAATACAAGGTCTATAGTAGTCCAATTTCAAGAGGTGAACTTGAGAAGCATTGGGATGAGGTTGATCTTTGCAAGCGTGCTGACCTTATTGTTCCAGTGGGACCAAGACTTGGAAAGGCTTATCATTCATATTTACAAGAATGCAAAAAAGATGAGGACTTTTTTGAGCTTATTCCTGGTCTTTTTGAGCGTGAGTTTGGAGATTTACCTGCAAAGCAGAAACCCAAAGATGAGAGTAATGATTTCATTGTATTGTTGTGTGGGCGTGGTGATGAAGAGGATTTTGAATTGAAAGGCTACAACACTGCTGTCAAAGCATTTGCTGATCAGCGACTGAAGGGGAAACATTACTCTTTGCTTTTTGTTGGTTCACCTGAAGGGAGGCAGGATGAGGTCAGGGAAAGGCTTCTCAAATATGGAATTACAAATGAACAGCTGACAGTGAGAGAGTTTGTAAAGAGCAGAGAAAGAATGAAGGAGCTTTTTTGTGAAGTGGATATGGTCATCATGCCTTCAAAATCAGAGGGATTTGGCCTTGTTGCCCTTGAAGCCCTGTCAGCTGGCTTACCCATTCTCGTTGGGAGCAACTCAGGATTTGCAAGAGCAATTAAAAACATTCCCTTGGGAAAATACAGCATAGTTGGAGATTCGGGAGATCCTGCCAAATGGGCTGAAGTAATTGAGGATGTACGAGATAGACATGGAGTGGTCCTTGAAGAAAGTGAAATGCTGAAAGAGCATTATAGCAAGAAGTTCTGTTGGCAAAAACAGTGTGAGGAACTTGTTGCCAGATTATGGAAGATGGTTTGTGGGACATCTGCTGCTCAAGCTGTAGCAGCAGATGACGTGATGGCACAATGCCCCACTGAAGTTTCAGAATCAGTTTGTCAATCCATTCCAACAACAATGCAACAGCACATTGAGGAAGGTGCAGTTACCTCAGGCAGAGGACAAGAGAGAAGACCAGGAGGTGACCTTACCTTGCCTGAGCTTGCAGACCATCTCATCAAATTAAAAATCAAGACGTCAGGTCTAAATGAAGAACAACAGAAAGCTGTCTATGAGTTGTTAATACATCATGCAAGAGAATACATGAAGTCACGAAACTATTCCAAAGTTAAAGTACCAGGAGTGGAAGCCTTCCTTGAATATTTAGAACTGACATACGATGTGTCGTGCCTTACTTTCAATTTGGGCTCTCTTATCATCAGTCTGGATTGCAAAACGTTAAAAGGTCTTGACAAGCTGTGGAATGACCACCTCTCTGGTCACCTCGGTAAAGTATCAAAGAGGCACCTTGTATCTGATGAAATGATAAAGAACCTTAACCTGAGGACAGTCAACTTGAAGACAGTCATTGATGAGGAAAACTATTTGAACTGCAGGAAAGTTCTTATGGAATTGTCAAGAGAAGGCGACGGAACTCATTCACTTTCTCAACAAAGAATTCTTGATCAGGGAACTAGTATTACTGGGATGGCCACAGCTGCAGATCACAAGGAGGTTAAGCAAGAGGACACAGACTGGATGATTAGGAAGGAAAAGGCCGCAGCATCTAGGAGCGCTCTTCACAAGGCCTCAATCAATGGACAATATGAGGAAGTCCAAAAGTACCTTTCCAGTGGATGTGCGGTTGACGTTAAAGATCAGTTTTTGTTGACACCATTGCACCTTGCTTGTTGGCATGGACAGGAATCCGTTGTCAAGCTCTTGTTAGAGAATGGTGCAGATGTTAATGCTACAGATAGGTTTCAGTTCACTCCTTTGCACAAAGCTGAGCGTCGAAATTATCAATCGATAGTAAAACTGCTCCTGAATCACAAAGCAAGACCAACGTTTCAACAACCACCCAGTCTAAAAACATTAGGAAGAAGGGCATTTACTCGCACGGACGAGCATTCAGGATTCAATCTACTCCAGGCAGCTGTCTTGGAAGGAGATTATGACACTATCACCAAAGCAAAATCTACAAAGAGTTAG

Transcript

FUN_026273-T1

ACTATAAAAATCCTCATACATAAAAAACCCCAGAACCCCATTCCAATATAATCTAAACAGTTTTACCCTTTCCCCTTTAGTTCAAATAACCAGCAATTACAGGCACAATGAAAATTGTACATAAAAGAATGAGCTGGCTCACAGGGCCCTTTGATTTGAAATAGGTGTATGTTTTAAAAGTAAATGTATAAATATAACGCTCGGTATGGGCGTTACAAGAAGTGCATAAACCTGTGGCATGATTATTATGACTTTTGGTGGGCCAAAAACTTCGCTTGATGGTTTGTTTTCATAATTTGGTGAAATGATGTCACGATATGAAGTATCTGAACAAGCAGATGCAGTGAGGAAAATATTAAACATTACTCTGCTAGCAAGTGAATGGAAGTCATCAGCTGGTGGTTTGTCAACATTAAATAGGGAACTTGCAATTCATCTTTCACAGATACAAAATGTGAGAGTTTCACTATTGGTTCCAGAGGGCGCTTGTAATGATGAAGACAAAAGGGAGGCTAGAAGTTTTGGCATCAGTATTCTTGATGCAAAGGAATGTGTTGCTGTTGAACCTCTCCTTTGGTTGAGCAACCCACCTCAGGATCACAAAATAGATGTTATTGTTGGTCATGGTGTAAAACTTGCTCGTCAAGTTCAACTCATTAAAAGACATGTGCAATTCCAAAATTGCAAGTGGGTACATGTGGTCCATACTGAACCTGAAGACCTTGGCAAATACAAGGTCTATAGTAGTCCAATTTCAAGAGGTGAACTTGAGAAGCATTGGGATGAGGTTGATCTTTGCAAGCGTGCTGACCTTATTGTTCCAGTGGGACCAAGACTTGGAAAGGCTTATCATTCATATTTACAAGAATGCAAAAAAGATGAGGACTTTTTTGAGCTTATTCCTGGTCTTTTTGAGCGTGAGTTTGGAGATTTACCTGCAAAGCAGAAACCCAAAGATGAGAGTAATGATTTCATTGTATTGTTGTGTGGGCGTGGTGATGAAGAGGATTTTGAATTGAAAGGCTACAACACTGCTGTCAAAGCATTTGCTGATCAGCGACTGAAGGGGAAACATTACTCTTTGCTTTTTGTTGGTTCACCTGAAGGGAGGCAGGATGAGGTCAGGGAAAGGCTTCTCAAATATGGAATTACAAATGAACAGCTGACAGTGAGAGAGTTTGTAAAGAGCAGAGAAAGAATGAAGGAGCTTTTTTGTGAAGTGGATATGGTCATCATGCCTTCAAAATCAGAGGGATTTGGCCTTGTTGCCCTTGAAGCCCTGTCAGCTGGCTTACCCATTCTCGTTGGGAGCAACTCAGGATTTGCAAGAGCAATTAAAAACATTCCCTTGGGAAAATACAGCATAGTTGGAGATTCGGGAGATCCTGCCAAATGGGCTGAAGTAATTGAGGATGTACGAGATAGACATGGAGTGGTCCTTGAAGAAAGTGAAATGCTGAAAGAGCATTATAGCAAGAAGTTCTGTTGGCAAAAACAGTGTGAGGAACTTGTTGCCAGATTATGGAAGATGGTTTGTGGGACATCTGCTGCTCAAGCTGTAGCAGCAGATGACGTGATGGCACAATGCCCCACTGAAGTTTCAGAATCAGTTTGTCAATCCATTCCAACAACAATGCAACAGCACATTGAGGAAGGTGCAGTTACCTCAGGCAGAGGACAAGAGAGAAGACCAGGAGGTGACCTTACCTTGCCTGAGCTTGCAGACCATCTCATCAAATTAAAAATCAAGACGTCAGGTCTAAATGAAGAACAACAGAAAGCTGTCTATGAGTTGTTAATACATCATGCAAGAGAATACATGAAGTCACGAAACTATTCCAAAGTTAAAGTACCAGGAGTGGAAGCCTTCCTTGAATATTTAGAACTGACATACGATGTGTCGTGCCTTACTTTCAATTTGGGCTCTCTTATCATCAGTCTGGATTGCAAAACGTTAAAAGGTCTTGACAAGCTGTGGAATGACCACCTCTCTGGTCACCTCGGTAAAGTATCAAAGAGGCACCTTGTATCTGATGAAATGATAAAGAACCTTAACCTGAGGACAGTCAACTTGAAGACAGTCATTGATGAGGAAAACTATTTGAACTGCAGGAAAGTTCTTATGGAATTGTCAAGAGAAGGCGACGGAACTCATTCACTTTCTCAACAAAGAATTCTTGATCAGGGAACTAGTATTACTGGGATGGCCACAGCTGCAGATCACAAGGAGGTTAAGCAAGAGGACACAGACTGGATGATTAGGAAGGAAAAGGCCGCAGCATCTAGGAGCGCTCTTCACAAGGCCTCAATCAATGGACAATATGAGGAAGTCCAAAAGTACCTTTCCAGTGGATGTGCGGTTGACGTTAAAGATCAGTTTTTGTTGACACCATTGCACCTTGCTTGTTGGCATGGACAGGAATCCGTTGTCAAGCTCTTGTTAGAGAATGGTGCAGATGTTAATGCTACAGATAGGTTTCAGTTCACTCCTTTGCACAAAGCTGAGCGTCGAAATTATCAATCGATAGTAAAACTGCTCCTGAATCACAAAGCAAGACCAACGTTTCAACAACCACCCAGTCTAAAAACATTAGGAAGAAGGGCATTTACTCGCACGGACGAGCATTCAGGATTCAATCTACTCCAGGCAGCTGTCTTGGAAGGAGATTATGACACTATCACCAAAGCAAAATCTACAAAGAGTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1R8N8	D-inositol 3-phosphate glycosyltransferase OS=Paenarthrobacter aurescens (strain TC1) OX=290340 GN=mshA PE=3 SV=1
D5UJ42	D-inositol 3-phosphate glycosyltransferase OS=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / BCRC 11376 / JCM 18109 / NBRC 3775 / NCIMB 8073 / NRS 134) OX=446466 GN=mshA PE=3 SV=1
D1BD84	D-inositol 3-phosphate glycosyltransferase OS=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) OX=446469 GN=mshA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24171 all species →	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0031436 all species →	Cellular Component	BRCA1-BARD1 complex	Interproscan
GO:0070531 all species →	Cellular Component	BRCA1-A complex	Interproscan
GO:0085020 all species →	Biological Process	protein K6-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_026273-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.