Gene detail

Detailed information of FUN_026309-T1 in Acropora pulchra

Genomic Location: ptg000020l:7644466...7654406
NR annotation: XP_015776341.1, PREDICTED: acid-sensing ion channel 2-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_026309-T1

ATGCACGTTAATACAGAGTTTGCCAATTCGAGGGAATTGTGTCCCAAAGATTTGACCACGGAACGCAGAAGTATCGTTGACGATTACATAGTCGTAGTGAAAACACAGCAAACTTCACTTTTGGAGATCTTTCACCGTAGTTTTGTCGCTTGCTACGACACTGGAAGCATGGCATGTCCTCAAGTGTCGCCAAAAAAGAAGAAGAAGAAGGAGGCAATAAGCGATTCGGACAACAGCGAGGAGGAAGATGAAATCCCGACCACAAAGGAACTATGGCAAGAATTCCTGCACAGTCTTACCCTTCATGGATTTCGTTTTATATTCGAAGAAGGACCCAAAATCCGCCGCATAATTTGGCTGATTATTCTAATATTTGCTCTTTTCATGCTGTTGTTGCAAAGCAAAAAGAGTATACAAAAATATTTTGATCGTCCAGTTACTACCACAGTACAAGTGGAGTTTTTGGACGAGATAACATTTCCCGCCGTTTCAATATGTAACTTCAATTTGTTCCCATATTATTTGATCAATGGAACAATTGGAGAAAAGGTCATGTCTATCTTGGCCCCACAAAACTATATCGATAACAAGGAGGAGGTGCTGTTTGCTCGCTCACCCATCCCGAACTTCCTTAACTACCTTCGTCGACGTCGCCGAAAAGAATCGAAAAAAGCCGATGACGATGACGACATTGACGTGCTTGGTGACGATACTACATTCGGCTTTGATGACACGTTTGATTTTGCGCAATTTGTTAGGACTCATGGGCATCGCATTGATCACATGATAAAGAAATGTCGTTGGAAATCACAGCCGTGTGGACCCGAAAATTTTACAGCTGTAATAACTGAATTTGGTCTTTGTTATACCTTCAATTCAGGTTTAAAGGGGCATCCACTTTTGAAAGTACAGCGTGCCGGAGTAGATTACGGTCTTAGGTTATCTCTGAGCGTTCAACAAGATCAATATTACGGATCACTAAGGGATTCATCAGGGTTCAAAGTCATGGTGCATGATCAAGAGGAGCCACCGCTGATCAATGAGCTTGGTTTTGCAATCCAACCGGGGACACATACATTCTGCGGGCTCAGGAAGGAAGTGATGCACAATTTACCCAGTCCGTTTAAGACGGCTTGCGAAGACAAGCACTTGGCCGGCTTCAAAAAATATACCAAGTCTGCCTGTCTTCTTAAATGCCGCGCTGACTACGTTATAAGCATGTGTAAATGCAGATCGTATGATCTGGAAGGTGAAGCACCACCTTGTCTGCCACAAGAGGTCAAAAACTGCGTTTGGCCCGCCATGGAAATTTTTCGTAACGAAAGCAACAACTGTGAATGTCCTGTACCATGCGAGATAACCAAGTATCAGGTACAACTAAGCTATGCCCAAACCCCTGCCAAACATTTCTCAGAAGTACTGGCGCGGAGAAAGCACGTCAGGAAAGATGTCATGAGACATTATCTGAGAGACAATTTTCTAGAGTTGGACGTTTATTTTGAGGAAATGCAAGTCACTTTGATAACACAAAGACAAGCATATGATCAAGAAAGCTTGTTCGGTCAATTTTCAGCACATAGTGAGAGACAAGAGGTAAAGATAATGCCTAGATCAGCTGGAGAAAAGGAAAACTCTGAAGCCGACAACAGTGGCCATAGCATAACCCACCAAAAGTCTAGGTCACATGGTGTAGAACATACATATACTCAAAAGGAGCCTTTTGAGTGCAAACACTGTGGCAAATGTTTCCCCGCATCGGTAAATCTCAAGAAACATGAAAAAATCCATTCTGAAGAAAAGAATTTCAAATGTAAACAGTGTGGTATGTGTTTTAGAGAAGGTGTGAAGTTAAAGAGACATGAGAAGTCTCATTCTGGAGAGAAGCCGTTTGATTGTAAGCAGTGTGACAAGTCATTCAGCAGAGCAGAAAGTCTTGGATCACATGAACGAATTCACAATGGCCTGAAGCCATATAAATGCACACAGTGCGACAAATGTTTTAGTATCTCAGGAAATTTAAGAAAGCATGAAAGGGTGCATACTGGAGAAAAACCTTATGAATGCAAGCAATGTGGCAAGTGTTTTTCAGTGACAGGAAGTCTAAAGAGACATGAAAGAGTTCATACTGGAGAAAGGCCTTATCAATGCACGTACTGCGACAAAAGCTTTAATGAAGCAACAAAATTAACCAGGCATGAAACGTGTCATACAGGGCAGAAGCCTCATAAATGCCAACAGTGTGGAAAATGCTTTTCTCAAGCAACAAGTCTGAAGACTCACCAAAGGGTGCATACTGGAGAGAAGCCATATAAGTGTAAAGAATGTGGAAAGTGTTTTAATTCAACCGGGAGTCTGAAGTCTCACGAAAGAATCCACACTGGTGAGAAACCTTACAAGTGCAAAGAATGTGGAAAGTGTTTCAGAGAAGCAGGAAAATTAAAGGTACATGGAAGAATTCACACAGGGGAGAAGCCGTACGAATGCAAACAGTGTGGAAAATGTTTTAATCAATCAAGGCATTTGAAAACGCATGAAATAGTCCACACTGGGGAAAAGCCGTATGAATGCAAACAATGTGGCAAGTGTTTTAACCAAGCAGGAATTTTAAAGGTGCACGAGAGAGTCCATACTGGTGAGAAACCTTATCAGTGTAAGCAGTGTGGCAAATGTTTCAGGCAAGCAGGAACGTTGAGGACCCATGAAAGAGTTCACACTGCAAAGATTCCTGAGAGCACAAGTGTTTTGGCAAGTGTTATAGTGGAACAGTTATATTGA

Transcript

FUN_026309-T1

ATAATGGTGACTTATAACAAGAATGCACGTTAATACAGAGTTTGCCAATTCGAGGGAATTGTGTCCCAAAGATTTGACCACGGAACGCAGAAGTATCGTTGACGATTACATAGTCGTAGTGAAAACACAGCAAACTTCACTTTTGGAGATCTTTCACCGTAGTTTTGTCGCTTGCTACGACACTGGAAGCATGGCATGTCCTCAAGTGTCGCCAAAAAAGAAGAAGAAGAAGGAGGCAATAAGCGATTCGGACAACAGCGAGGAGGAAGATGAAATCCCGACCACAAAGGAACTATGGCAAGAATTCCTGCACAGTCTTACCCTTCATGGATTTCGTTTTATATTCGAAGAAGGACCCAAAATCCGCCGCATAATTTGGCTGATTATTCTAATATTTGCTCTTTTCATGCTGTTGTTGCAAAGCAAAAAGAGTATACAAAAATATTTTGATCGTCCAGTTACTACCACAGTACAAGTGGAGTTTTTGGACGAGATAACATTTCCCGCCGTTTCAATATGTAACTTCAATTTGTTCCCATATTATTTGATCAATGGAACAATTGGAGAAAAGGTCATGTCTATCTTGGCCCCACAAAACTATATCGATAACAAGGAGGAGGTGCTGTTTGCTCGCTCACCCATCCCGAACTTCCTTAACTACCTTCGTCGACGTCGCCGAAAAGAATCGAAAAAAGCCGATGACGATGACGACATTGACGTGCTTGGTGACGATACTACATTCGGCTTTGATGACACGTTTGATTTTGCGCAATTTGTTAGGACTCATGGGCATCGCATTGATCACATGATAAAGAAATGTCGTTGGAAATCACAGCCGTGTGGACCCGAAAATTTTACAGCTGTAATAACTGAATTTGGTCTTTGTTATACCTTCAATTCAGGTTTAAAGGGGCATCCACTTTTGAAAGTACAGCGTGCCGGAGTAGATTACGGTCTTAGGTTATCTCTGAGCGTTCAACAAGATCAATATTACGGATCACTAAGGGATTCATCAGGGTTCAAAGTCATGGTGCATGATCAAGAGGAGCCACCGCTGATCAATGAGCTTGGTTTTGCAATCCAACCGGGGACACATACATTCTGCGGGCTCAGGAAGGAAGTGATGCACAATTTACCCAGTCCGTTTAAGACGGCTTGCGAAGACAAGCACTTGGCCGGCTTCAAAAAATATACCAAGTCTGCCTGTCTTCTTAAATGCCGCGCTGACTACGTTATAAGCATGTGTAAATGCAGATCGTATGATCTGGAAGGTGAAGCACCACCTTGTCTGCCACAAGAGGTCAAAAACTGCGTTTGGCCCGCCATGGAAATTTTTCGTAACGAAAGCAACAACTGTGAATGTCCTGTACCATGCGAGATAACCAAGTATCAGGTACAACTAAGCTATGCCCAAACCCCTGCCAAACATTTCTCAGAAGTACTGGCGCGGAGAAAGCACGTCAGGAAAGATGTCATGAGACATTATCTGAGAGACAATTTTCTAGAGTTGGACGTTTATTTTGAGGAAATGCAAGTCACTTTGATAACACAAAGACAAGCATATGATCAAGAAAGCTTGTTCGGTCAATTTTCAGCACATAGTGAGAGACAAGAGGTAAAGATAATGCCTAGATCAGCTGGAGAAAAGGAAAACTCTGAAGCCGACAACAGTGGCCATAGCATAACCCACCAAAAGTCTAGGTCACATGGTGTAGAACATACATATACTCAAAAGGAGCCTTTTGAGTGCAAACACTGTGGCAAATGTTTCCCCGCATCGGTAAATCTCAAGAAACATGAAAAAATCCATTCTGAAGAAAAGAATTTCAAATGTAAACAGTGTGGTATGTGTTTTAGAGAAGGTGTGAAGTTAAAGAGACATGAGAAGTCTCATTCTGGAGAGAAGCCGTTTGATTGTAAGCAGTGTGACAAGTCATTCAGCAGAGCAGAAAGTCTTGGATCACATGAACGAATTCACAATGGCCTGAAGCCATATAAATGCACACAGTGCGACAAATGTTTTAGTATCTCAGGAAATTTAAGAAAGCATGAAAGGGTGCATACTGGAGAAAAACCTTATGAATGCAAGCAATGTGGCAAGTGTTTTTCAGTGACAGGAAGTCTAAAGAGACATGAAAGAGTTCATACTGGAGAAAGGCCTTATCAATGCACGTACTGCGACAAAAGCTTTAATGAAGCAACAAAATTAACCAGGCATGAAACGTGTCATACAGGGCAGAAGCCTCATAAATGCCAACAGTGTGGAAAATGCTTTTCTCAAGCAACAAGTCTGAAGACTCACCAAAGGGTGCATACTGGAGAGAAGCCATATAAGTGTAAAGAATGTGGAAAGTGTTTTAATTCAACCGGGAGTCTGAAGTCTCACGAAAGAATCCACACTGGTGAGAAACCTTACAAGTGCAAAGAATGTGGAAAGTGTTTCAGAGAAGCAGGAAAATTAAAGGTACATGGAAGAATTCACACAGGGGAGAAGCCGTACGAATGCAAACAGTGTGGAAAATGTTTTAATCAATCAAGGCATTTGAAAACGCATGAAATAGTCCACACTGGGGAAAAGCCGTATGAATGCAAACAATGTGGCAAGTGTTTTAACCAAGCAGGAATTTTAAAGGTGCACGAGAGAGTCCATACTGGTGAGAAACCTTATCAGTGTAAGCAGTGTGGCAAATGTTTCAGGCAAGCAGGAACGTTGAGGACCCATGAAAGAGTTCACACTGCAAAGATTCCTGAGAGCACAAGTGTTTTGGCAAGTGTTATAGTGGAACAGTTATATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16515	Acid-sensing ion channel 2 OS=Homo sapiens OX=9606 GN=ASIC2 PE=1 SV=1
Q925H0	Acid-sensing ion channel 2 OS=Mus musculus OX=10090 GN=Asic2 PE=1 SV=1
Q62962	Acid-sensing ion channel 2 OS=Rattus norvegicus OX=10116 GN=Asic2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000330 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00858 all species →	ASC	Amiloride-sensitive sodium channel	Family	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF16622 all species →	zf-C2H2_11	zinc-finger C2H2-type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050527 all species →	Family	Snail/Krueppel C2H2-type Zinc-finger	Interproscan
IPR001873 all species →	Family	Epithelial sodium channel	Interproscan
IPR041697 all species →	Domain	Zinc-finger C2H2-type 11	Interproscan
IPR020903 all species →	Conserved_site	Epithelial sodium channel, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24388 all species →	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005272 all species →	Molecular Function	sodium channel activity	Interproscan
GO:0006814 all species →	Biological Process	sodium ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.