Detailed information of FUN_026313-T1 in Siderastrea siderea

Genomic Location: contig_25:6837993...6867447
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_026313-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR001025
all species →		DomainBromo adjacent homology (BAH) domainInterproscan
IPR053032
all species →		FamilyBromo adjacent homology domain-containing proteinInterproscan
IPR043151
all species →		Homologous_superfamilyBromo adjacent homology (BAH) domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46576
all species →		BROMO ADJACENT HOMOLOGY DOMAIN-CONTAINING 1 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003682
all species →		Molecular Functionchromatin bindingInterproscan
GO:0000976
all species →		Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0005677
all species →		Cellular Componentchromatin silencing complexInterproscan
GO:0031507
all species →		Biological Processheterochromatin formationInterproscan
GO:0045892
all species →		Biological Processnegative regulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_026313-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_026313-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
10TPM > 0
7Conditions
22.4Max TPM
1.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 1.00 14.41
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 1 0.13 2.53
holobiont · control.pH Control.temp 19 1 0.41 7.83
Whole organism 4 4 19.46 22.39
unannotated 1 1 17.33 17.33
live coral tissue/skeleton 1 1 12.85 12.85

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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