Detailed information of FUN_026329-T2 in Siderastrea siderea

Genomic Location: contig_25:7280141...7306921
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008065 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10490
all species →
CENP-F_C_Rb_bdgRb-binding domain of kinetochore protein Cenp-F/LEK1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018302
all species →
DomainKinetochore protein Cenp-F/LEK1, Rb protein-binding domainInterproscan
IPR043513
all species →
FamilyCentromere protein Cenp-FInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18874
all species →
CMF/LEK/CENP CELL DIVISION-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000278
all species →
Biological Processmitotic cell cycleInterproscan
GO:0000775
all species →
Cellular Componentchromosome, centromeric regionInterproscan
GO:0000922
all species →
Cellular Componentspindle poleInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0008017
all species →
Molecular Functionmicrotubule bindingInterproscan
GO:0010389
all species →
Biological Processregulation of G2/M transition of mitotic cell cycleInterproscan
GO:0051310
all species →
Biological Processmetaphase chromosome alignmentInterproscan
GO:0070840
all species →
Molecular Functiondynein complex bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11499CENPF; centromere protein F-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_026329-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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