Gene detail

Detailed information of FUN_026416-T1 in Acropora pulchra

Genomic Location: ptg000020l:8556365...8579961
NR annotation: XP_029183662.2, amyloid beta A4 precursor protein-binding family B member 1-interacting protein-like isoform X1 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_026416-T1

ATGTCTCCCTACTTTTGCGGTGAAAGCCCTCAATCAGGAATTGCTAAAATGGACAATGAAGAAAGTGAAGAGCATGTGATTACAGAAGTGACTCCTGCAAGCAGTGAGAATGACTTGGATGAGAAAAGGTCAGAAGAAAGTGAAGAGGAGGGAGATGTTGATGAAGATGACGACATTGATAAGATGTTAGATGACTTGGCAAGTTTCCAAGAGGAACTTGAGCAGAAATCCCAGATCCAAGCTGATCACGAAGGAGAAAGTTCAGAGATTCTAAGCTATGTGCCACCATCACAGCCCTTGGATCAATTCAGATTTTCCATTTCTGCTATAGAAGGAAGTGGGGAAGTTGATTTAGATGCACTGTTGGAGGACCTCTGTGTTATGGAAAAAGACATGAATTTTGGCAATGAAACGAGCTTGATGCCCTCGCAAACACTTTCCAGTTCTAATTGTCCTCTCTCCCCCAAAGTTAAGGTTTCAGCAGATGTCATCAGCCGTCTGGAAACAGTTCAAGAAGAATCCAGGGAGTTGACTCTTGAAGAGCAGCAAGAGCGGGTAAAAGCAGAAAAGATCAGGATCGCTTTAGAGAAACTGCGAGCTGCGAGGGTGAAGAAATTGGTGGTGAAAGTGTACAACGATGAAGACCCAACGTCGAAAACAGTGGCTATCGATCAAACGTGGACAGCGTGGGAAGTGTGTAAGAAGATGATGCGAAAGAACGACACAGAACCCGATCCCAACTGGGTACTGATCGAAAGAAATCCTCAGCTTAACATTGAGCGTCTCCTCGAAGACCACGAATCTGTGGTAGATGTGGTTTCCAGCTGGCCTTGGGATTCTGAAAATAAACTCGTTCTTAACAACAGAAGAGAGAAGTACGCGCTGTTCAGAAACCCTCAGAACTTTCTGTTGAGCAGCGACACTTCAACAGGCGCTGCGCAGCTGGCTGAAAAAAGCAAAGACATCTTACTTCAGGAGTTCTTTCAAAAAGATGCGATGCGGTTGCCAGAGCTTGATGGAGTTTTGTATCTGAAGGAAGGAAAAAAGTCTTGGAAGAAACATTACTTTGTCCTGAGGGCCTCTGGCATCTACTACACGCCAAAGGGCAAAACTAAGTCGTTGCGAGATATTGTTTGTTTGTTGAAGTTTGAACACGTGTCAATATTCAATGGCATGGGATTCAAGAAGAAGTTAAAAGCACCCACCGATCACTGCTTTGTACTGAAGCATCCTCAGTTTCATGATTTGGAATCCAAAGCTGTGCGTTGTTTTTGTGCTGAAGATCTACCCACCATGCAACGCTGGGTGGTGGGCATCAGGCTAGCAAAGATTGGATACAAGATGTTGCTGGATTATACCGAAACTCAAGAGGAGATGGACAAACTGGCGTTTACTCTGGACAGAAATAACTTCAGCAGGGCGTCGAGTTTTGCGGTTGGGCATTGTACAGAAACAGCCGAGATTAAGCCACAGTCTGAACCGACAAAAGAATTCCATGCAATGAAAGCCAGATCTCAATCCGAAAGAATAAAGGACTCGATCGGCAGCTCATCCATTCACCCAAGCGGCTCTATGAGCTTCTCCGTCAGCAGGACTAAAACTGCACCCAGGAAACCTTCCAAGAAAATCGGAAATCTGTTTTCTGACGCGTGGAAGAGGGGCAACGTGATCGAAGACAGGAGGATTCCGGAGCCGATATCGCCCGATACTCCTTCAGTCAACAGCACGGGTGCGGTTACGCCCAACACTGTGAGCCCCAAGACCTTTACCATTGAAAATGTTGGTATTGGAATGGAACGGGTAGACGAGGAATCCGATGAAGTCAGCTCTGTTACCGAACAGCTTCAACGAGGTGAACAGGCTCAGGTGGTAGCGCAACACCATCTGGTGCTGGACCCACCCCCAGTGCCGCGCAAATCCTTTTCCAAGAAACAAGAGGAGATGTCATCTGAGACTCGGGAAGACACCAACAATAATGAAGAGGAACACAACGGTGATTTCAGTCGGAAAAACAAGGGTTCGACGAGGCGATCTAGAAGGACGCGTAGCTCGTCACCACCTCCACCACCACCTACCCCACCCACAGAACGTGCGCAACCGCCTGCCCCACCCCCACCTCCACCCGTGCCCTCGCTAGGTACCAAATTATTTACTAGTCCCTCCTCAAAAAAATCAAATAGCGGAGCCAGTGATCTCGTGCTAAGTAACACAGAAAAAAAGAAAAGTCCCCCTCCAGTTCCTCCTAAATCAAAATCACGGACATCCTCGCAGCTGTCGACAGATTCCGACGTGTTCCACCGGGACTCCTCGCCTACCGCAGACCATGAAGTGTTTGTCGACTCGCTGTTCCCCCCTCCATCTCGACTGTTGTCCGCTTCCTTGCAAGAGATGCCCCCACCACCACCCATTGGGAATCCTCAAGATGATGTAGACGTCGAACTCCCTCCCCCTCCTCCAGACGTTTTATTTCGTGAAAGGCTAAGTGAATCTCTTAGCAACGGAAGGAGCAGGGCGCTCAGCGGAGGAGCTGAACCACCGTTTGTTCCACCCAAAACAGGAACGCCAAAACTCAGCAGCTCAGGGACACCAAACCCTTAA

Transcript

FUN_026416-T1

CAACTGTCCACACGAGCAGCGGAAGAAACCCACCCACCAATTTTTCGTTTTGGTAATTTCCTGTTAACTTGGAACCTCTGTAATTTGCACGTATTATTTCGATCCTCCGCTTCCTACCGCACCTCAAAAAAACGGTAAACGTCAAACGCGTGGTAAATTCCGGAGCATTCCATCGAATTCCATTCATCGTCGAGAAAATATCCGGTGGCACGAAACGAAAAACGTGCTCGATTTTTCAGTTTGGTGAGTTGGTTGTTAAATTGTGTAATCAAGCAGTTATCTTGGACAACATAATTCTGCGGTATCTTGGAAGAAGAAGGAATATCCATTGCTTATTCTTACACAGAAATCAATAGTGGTCCGCTTACAGTTGTTTAAAATTCTTGGATTAATTAATATGTCTCCCTACTTTTGCGGTGAAAGCCCTCAATCAGGAATTGCTAAAATGGACAATGAAGAAAGTGAAGAGCATGTGATTACAGAAGTGACTCCTGCAAGCAGTGAGAATGACTTGGATGAGAAAAGGTCAGAAGAAAGTGAAGAGGAGGGAGATGTTGATGAAGATGACGACATTGATAAGATGTTAGATGACTTGGCAAGTTTCCAAGAGGAACTTGAGCAGAAATCCCAGATCCAAGCTGATCACGAAGGAGAAAGTTCAGAGATTCTAAGCTATGTGCCACCATCACAGCCCTTGGATCAATTCAGATTTTCCATTTCTGCTATAGAAGGAAGTGGGGAAGTTGATTTAGATGCACTGTTGGAGGACCTCTGTGTTATGGAAAAAGACATGAATTTTGGCAATGAAACGAGCTTGATGCCCTCGCAAACACTTTCCAGTTCTAATTGTCCTCTCTCCCCCAAAGTTAAGGTTTCAGCAGATGTCATCAGCCGTCTGGAAACAGTTCAAGAAGAATCCAGGGAGTTGACTCTTGAAGAGCAGCAAGAGCGGGTAAAAGCAGAAAAGATCAGGATCGCTTTAGAGAAACTGCGAGCTGCGAGGGTGAAGAAATTGGTGGTGAAAGTGTACAACGATGAAGACCCAACGTCGAAAACAGTGGCTATCGATCAAACGTGGACAGCGTGGGAAGTGTGTAAGAAGATGATGCGAAAGAACGACACAGAACCCGATCCCAACTGGGTACTGATCGAAAGAAATCCTCAGCTTAACATTGAGCGTCTCCTCGAAGACCACGAATCTGTGGTAGATGTGGTTTCCAGCTGGCCTTGGGATTCTGAAAATAAACTCGTTCTTAACAACAGAAGAGAGAAGTACGCGCTGTTCAGAAACCCTCAGAACTTTCTGTTGAGCAGCGACACTTCAACAGGCGCTGCGCAGCTGGCTGAAAAAAGCAAAGACATCTTACTTCAGGAGTTCTTTCAAAAAGATGCGATGCGGTTGCCAGAGCTTGATGGAGTTTTGTATCTGAAGGAAGGAAAAAAGTCTTGGAAGAAACATTACTTTGTCCTGAGGGCCTCTGGCATCTACTACACGCCAAAGGGCAAAACTAAGTCGTTGCGAGATATTGTTTGTTTGTTGAAGTTTGAACACGTGTCAATATTCAATGGCATGGGATTCAAGAAGAAGTTAAAAGCACCCACCGATCACTGCTTTGTACTGAAGCATCCTCAGTTTCATGATTTGGAATCCAAAGCTGTGCGTTGTTTTTGTGCTGAAGATCTACCCACCATGCAACGCTGGGTGGTGGGCATCAGGCTAGCAAAGATTGGATACAAGATGTTGCTGGATTATACCGAAACTCAAGAGGAGATGGACAAACTGGCGTTTACTCTGGACAGAAATAACTTCAGCAGGGCGTCGAGTTTTGCGGTTGGGCATTGTACAGAAACAGCCGAGATTAAGCCACAGTCTGAACCGACAAAAGAATTCCATGCAATGAAAGCCAGATCTCAATCCGAAAGAATAAAGGACTCGATCGGCAGCTCATCCATTCACCCAAGCGGCTCTATGAGCTTCTCCGTCAGCAGGACTAAAACTGCACCCAGGAAACCTTCCAAGAAAATCGGAAATCTGTTTTCTGACGCGTGGAAGAGGGGCAACGTGATCGAAGACAGGAGGATTCCGGAGCCGATATCGCCCGATACTCCTTCAGTCAACAGCACGGGTGCGGTTACGCCCAACACTGTGAGCCCCAAGACCTTTACCATTGAAAATGTTGGTATTGGAATGGAACGGGTAGACGAGGAATCCGATGAAGTCAGCTCTGTTACCGAACAGCTTCAACGAGGTGAACAGGCTCAGGTGGTAGCGCAACACCATCTGGTGCTGGACCCACCCCCAGTGCCGCGCAAATCCTTTTCCAAGAAACAAGAGGAGATGTCATCTGAGACTCGGGAAGACACCAACAATAATGAAGAGGAACACAACGGTGATTTCAGTCGGAAAAACAAGGGTTCGACGAGGCGATCTAGAAGGACGCGTAGCTCGTCACCACCTCCACCACCACCTACCCCACCCACAGAACGTGCGCAACCGCCTGCCCCACCCCCACCTCCACCCGTGCCCTCGCTAGGTACCAAATTATTTACTAGTCCCTCCTCAAAAAAATCAAATAGCGGAGCCAGTGATCTCGTGCTAAGTAACACAGAAAAAAAGAAAAGTCCCCCTCCAGTTCCTCCTAAATCAAAATCACGGACATCCTCGCAGCTGTCGACAGATTCCGACGTGTTCCACCGGGACTCCTCGCCTACCGCAGACCATGAAGTGTTTGTCGACTCGCTGTTCCCCCCTCCATCTCGACTGTTGTCCGCTTCCTTGCAAGAGATGCCCCCACCACCACCCATTGGGAATCCTCAAGATGATGTAGACGTCGAACTCCCTCCCCCTCCTCCAGACGTTTTATTTCGTGAAAGGCTAAGTGAATCTCTTAGCAACGGAAGGAGCAGGGCGCTCAGCGGAGGAGCTGAACCACCGTTTGTTCCACCCAAAACAGGAACGCCAAAACTCAGCAGCTCAGGGACACCAAACCCTTAATCCAGTTGTCTCAACTTAGTGGAAGTTTTGCATCAAAGGCGTGTCTGGTCACATTAGAAGTCTTCTTGGTTCTAATTTGGCTCAGTTGGCGTCGTCACAAGGTTTTCGATAGTTCAGTTTGTCACTCCAATGTTATGCAATACATGAAGTGCGGTGTAAGTAAATAAGAATAATTAAAATGACTTCAAGGTTGTAAAGAATAAAAAAAGGGATTCTTTTTTTCCTCGGAGGCTGGACGTTATGCTCCTGCTTCAACACAAATTCTAGAATTTCGAACTTTATCCATTATTACGTACAAGATTGTAGCTTCTATCCTTATTCGGAAAAGGAACTTTGAAAGACAACTTTGAAACGCGAAAATGGAAAATCACGATTACTTTTTATATAATTATAATTAACTATAAAAATATTTAATATTGATGAACTTGTATTAATTAGTTTTATGCAGTTGGTGTGGTTAAATTTACGTTAACCCTGACCGGAGGAGACTTCGTGGTCAACAGAGTTCATTCGGTAGGGAGACTAAGAGCATACTCGGTAACCAGACACAGGCCTCACAGAAACTGTGTCCAGGTGAAAGATGAAACCATTGTTCAATCTAGAAAGACTTCAGAATCATGCAGGAAAATTGTGCTGCGTTTATCTAAATTTTGCTTATAAAATAATATTTTTAAGGTCATGCAAAGTAATTTAATAGGTCAAAATTATCGTTTGTAAAGTGAAATAACGTAGTTAGTGAACGATATTTGAGAAGTTGGGCTGTAATGCTTATCAGTTCGGTTTTGAAACGACCAAACAGAAATCAATTTTAGGGTTTACCTTTTCATGCAAGCTTTTATCGAAAATCGAGCAAAAAGCTCGAGGCAGAAGAAAGTCGCACTTTCTCTACCGCAAGCTCATTGCCAGGGTCTTCCCTTTGTTTTCAGAAAGGCCTGGAACATTTGAATTGTTACAGTGGAAATACGAATTGTTTTTCGAAGTACGTTATAGAGTTCATAGTTACCCTCTCAATATATATCGGAAGGAATTGTACATAGGAATGTAGGATGGGAAATACTTCTATAGCCCCAAATGTATTGGAAAGAAAATAGTGACGCCTTGTTTAATGAATATAAAGTACCTTTGTCTTTAATTTGAATTGTTGTGTCTTGACTTTGTTTCTAGTATTGACGACTCCAGGGCTGCGAGAGTCTGGTCCCTGTTTTTAGTCTCGGGCATCCATAAACGGCAGTGAGCTCCTGGAACAAGACAGCGTTTAATGTACAAGTGTCTCTGTGATTTCAGGAAAACGGCAAACGTCGGGCAGAAATCTTTCTTCTCCCGAAACTCTCTAAATTCTTCTTCTTCTTCTTCTTCTTGTTTTTTTTTTGAGGGGGCGGTGGGGATGCGGGAAGTGGAGAGAGTAAGGGCATGAGTACTACAAGTAAAGAATAGGATGTACTTTGTCCACAAGAAAACAGCCGTATTTCAACCATAATACTATTTAATTGATATTTCACAAATAATTTACACGAGCAAGAAAAAATACATCCATGTAACGTGCATTGATAGGGCTTCAAAGAAAAAAACAGTTAATCTCCAAAGTAGCTATATTTAAAAAAAAAACCAAGAAACTTGCTGGACAACTGAAGCTAAAATGTTTGAGGTGCACACATGATACAATCGCTGCAGTTGTCCAGCAGGCGTGAAGATAATTTCAATTCATCTCGATGTTTTTTGACCAACTAGTTGGATTTTACTAAAACAATTATTCCTCTCGCCCTCATGGCCTTTGAATCAATAGCCCGTTCGGCCTTCGGCCTCATGGACTATTGACTCAGAGCCCATTCGGACTAGAGGAATAATTGTTAAATACTTAAAACCACTGCATAAGAAGCCATCTTTGGATCCGAGTGAATTTAAGAGCTATTAACTTTAGACCTTTATCTAATCTTCGGTTTATCTCCAAAATAATTGAGAAATGTGTAGCTCAACAGCTGAGTATTTAAACAACAATGGTCCCGATGAGACCTTTCAATCCACCTACAAGAGTAACCATAGTAACTATAGTACGGAGACGGCTTTTATTCGAGTCTTTTGTGACACGAGTCAAAGAAAAACTAAATTGATTAATTGTGTAGGGGATATTAATGCATTGAAGTGTTCAAACAAGCTACTGATTGAACAGAAATAAGTCAGAAGTTCTTGTGATATTCTCCATTTATCGCCCTCGTCGACAATGTCTTTTGTTGATAAATGTCATGAAACTGTTTTCTGTTCCACGAGTGCTTGAAACACTGGTGCTACTATAGATTAATCGCTCTCCGTGAAACCTTGTGCAAACGCGGACCCTGTAAATCGTCCCCCTGTGGACCCATTTCAAGCATGACGTCATATTACGTGCGTAACGCGGGTTTTCTACGTACACATCTTACTCCCGACTCTGCTAAGATAATCGTTCAAGCCCTTATTGTTTCTAAACTTGATTACTGTAATTCACCACTATGTGGTTTTCCTTATCTTATTCAAAACCTAAACCCCGTCTCCAAGACTCTCCCACATTGCTCCTGTCCTTACAGATCTTCACTGGTTACCAGTTCTCCTTCGCATAGAATCCTCTAGATCACCTACAAAGCGCTTCGGGACACTCTCCGGCCCACAAATTCCTTTAACCATACCGGCCTAGTCGCAATCTGAGGTCTTCTCCCAAAAAATCTTTTAGTTAAACCTAGTTTTAACCTGACCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q70E73	Ras-associated and pleckstrin homology domains-containing protein 1 OS=Homo sapiens OX=9606 GN=RAPH1 PE=1 SV=3
Q5ZL23	Amyloid beta A4 precursor protein-binding family B member 1-interacting protein OS=Gallus gallus OX=9031 GN=APBB1IP PE=2 SV=1
Q8R5A3	Amyloid beta A4 precursor protein-binding family B member 1-interacting protein OS=Mus musculus OX=10090 GN=Apbb1ip PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003212 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR039664 all species →	Family	GRB/APBB1IP	Interproscan
IPR039665 all species →	Domain	APBB1IP, PH domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11243 all species →	GROWTH FACTOR RECEPTOR-BOUND PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_026416-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.