Detailed information of FUN_026453-T1 in Siderastrea siderea

Genomic Location: contig_25:9117410...9175919
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02862
all species →		DDHDDDHD domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004177
all species →		DomainDDHD domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23509
all species →		PA-PL1 PHOSPHOLIPASE FAMILYInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0004620
all species →		Molecular Functionphospholipase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_026453-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_026453-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
45TPM > 0
7Conditions
204.9Max TPM
28.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 11 34.83 204.94
holobiont · low.pH Control.temp 20 7 22.18 91.86
holobiont · control.pH_high.temp 20 9 25.33 120.06
holobiont · control.pH Control.temp 19 12 35.94 142.61
Whole organism 4 4 20.14 22.63
unannotated 1 1 18.76 18.76
live coral tissue/skeleton 1 1 16.66 16.66

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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