Detailed information of FUN_026505-T1 in Acropora pulchra

Genomic Location: ptg000020l:9880191...9882365
NR annotation: XP_015748533.1, PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 16 homolog [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5E9L7Vacuolar protein sorting-associated protein 16 homolog OS=Bos taurus OX=9913 GN=VPS16 PE=2 SV=1
Q9H269Vacuolar protein sorting-associated protein 16 homolog OS=Homo sapiens OX=9606 GN=VPS16 PE=1 SV=2
Q920Q4Vacuolar protein sorting-associated protein 16 homolog OS=Mus musculus OX=10090 GN=Vps16 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001418 (this species only)

 Pfam domain
No Pfam domain signature was detected for FUN_026505-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR016534
all species →		FamilyVacuolar protein sorting-associated protein 16Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12811
all species →		VACUOLAR PROTEIN SORTING VPS16Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003779
all species →		Molecular Functionactin bindingInterproscan
GO:0005765
all species →		Cellular Componentlysosomal membraneInterproscan
GO:0005768
all species →		Cellular ComponentendosomeInterproscan
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0007033
all species →		Biological Processvacuole organizationInterproscan
GO:0016197
all species →		Biological Processendosomal transportInterproscan
GO:0030897
all species →		Cellular ComponentHOPS complexInterproscan
GO:0042144
all species →		Biological Processvacuole fusion, non-autophagicInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_026505-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP