Detailed information of FUN_026583-T1 in Siderastrea siderea

Genomic Location: contig_26:1409796...1421460
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02874
all species →		ATP-synt_ab_NATP synthase alpha/beta family, beta-barrel domainDomainInterproscan
PF00006
all species →		ATP-synt_abATP synthase alpha/beta family, nucleotide-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004100
all species →		DomainATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainInterproscan
IPR000194
all species →		DomainATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainInterproscan
IPR022879
all species →		FamilyV-type ATP synthase regulatory subunit B/betaInterproscan
IPR020003
all species →		Active_siteATPase, alpha/beta subunit, nucleotide-binding domain, active siteInterproscan
IPR005723
all species →		FamilyATPase, V1 complex, subunit BInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43389
all species →		V-TYPE PROTON ATPASE SUBUNIT BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046034
all species →		Biological ProcessATP metabolic processInterproscan
GO:1902600
all species →		Biological Processproton transmembrane transportInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0033180
all species →		Cellular Componentproton-transporting V-type ATPase, V1 domainInterproscan
GO:0046961
all species →		Molecular Functionproton-transporting ATPase activity, rotational mechanismInterproscan
GO:0007035
all species →		Biological Processvacuolar acidificationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02147ATPeV1B, ATP6B; V-type H+-transporting ATPase subunit B-Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_026583-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
28TPM > 0
7Conditions
483.2Max TPM
74.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 5 55.97 272.52
holobiont · low.pH Control.temp 20 3 17.06 182.81
holobiont · control.pH_high.temp 20 6 109.35 483.16
holobiont · control.pH Control.temp 19 8 122.74 464.44
Whole organism 4 4 40.46 44.54
unannotated 1 1 78.26 78.26
live coral tissue/skeleton 1 1 89.85 89.85

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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