Detailed information of FUN_026630-T1 in Siderastrea siderea

Genomic Location: contig_26:2050102...2059843
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01084
all species →		Ribosomal_S18Ribosomal protein S18FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036870
all species →		Homologous_superfamilySmall ribosomal subunit protein bS18 superfamilyInterproscan
IPR001648
all species →		FamilySmall ribosomal subunit protein bS18Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13479
all species →		30S RIBOSOMAL PROTEIN S18Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005763
all species →		Cellular Componentmitochondrial small ribosomal subunitInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan
GO:0032543
all species →		Biological Processmitochondrial translationInterproscan
GO:0070181
all species →		Molecular Functionsmall ribosomal subunit rRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02963RP-S18, MRPS18, rpsR; small subunit ribosomal protein S18-Ribosomeko03011deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_026630-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
70TPM > 0
7Conditions
416.1Max TPM
93.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 13 81.78 210.40
holobiont · low.pH Control.temp 20 17 157.48 344.28
holobiont · control.pH_high.temp 20 17 61.12 153.17
holobiont · control.pH Control.temp 19 17 98.06 416.07
Whole organism 4 4 7.90 10.99
unannotated 1 1 3.96 3.96
live coral tissue/skeleton 1 1 7.45 7.45

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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