Detailed information of FUN_026646-T1 in Siderastrea siderea

Genomic Location: contig_26:2262918...2276338
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01388
all species →		ARIDARID/BRIGHT DNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051232
all species →		FamilyAT-rich Interactive Domain/SWI1 Chromatin RemodelingInterproscan
IPR001606
all species →		DomainARID DNA-binding domainInterproscan
IPR036431
all species →		Homologous_superfamilyARID DNA-binding domain superfamilyInterproscan
IPR043151
all species →		Homologous_superfamilyBromo adjacent homology (BAH) domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13964
all species →		RBP-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000976
all species →		Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25857ARID5; AT-rich interactive domain-containing protein 5-Transcription factorsko03000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_026646-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
9TPM > 0
7Conditions
21.5Max TPM
1.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 3 1.56 21.46
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 15.06 20.11
unannotated 1 1 6.83 6.83
live coral tissue/skeleton 1 1 11.20 11.20

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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