Gene detail

Detailed information of FUN_026718-T1 in Acropora pulchra

Genomic Location: ptg000020l:12835051...12847690
NR annotation: XP_029199275.2, alanyl-tRNA editing protein Aarsd1-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_026718-T1

ATCTTCTGCTGATTATACTGATCGCTCAAGATTGGACACATCACTTTCTGATGATTTTAGCCCACAGATTGACTGTTAGTTCCATTATTGTACGCATTTCTTTCCTTATTCGGTGTAACCCCTTCACAACACGTGCTCCAATACAACGAAATACAAAGATGGTCTTTGCCTGTCAGCAAGATTCTTTCCTCAAACATTTAAAGACGAAAGTTTTGTCATGCAAGGGCAGTAAGCTGGCCGGTAAGGAAGCTTTTGAAGTCATACTTGAGGATACCGTGTTATTTCCTGAGGGTGGTGGACAGCCTGATGACCATGGAACAGTGAATGGTGTTGAGGTCATGAGGGTGATAAGAAGAGGAGCAACTGCAGTGCATTTCCTTCCACAAGCAATCCCTGAGGGAACTGAGGTAGAGCTAGTTGTTGATTGGCCAAGAAGATTTGATCACATGCAGCAACATTCAGGGCAGCATCTGATCTCAGCAATCATTGAAAATAACTTTGGGTATGAAACAACATCATGGGAGTTGGGGAAACTGCGTTCTCACATTGAACTCAGTTGCAAGAAACTGACTGCAGAAGAAATGGATTGTATAGAGAAAACAGCCAATCAGATCATCAGGAACAGCACACCTGTCAATGTACATGTGCACCCAAGTGCCGCATGCCCTGATTTGAAAAATGCATCAACCAGAGGTCTCCCCGATGATCATGTGGGTCCTGTTAGGGTTATTGAAATACCAGGTATTGACAGAAATATGTGTTGTGGAACTCATGTCAGTAATTTAAGTCAAGTGCAGGTAATTAAACTGTTTCCAGACACTGAATCAATGCGAGGTGGAACAAGACTCTTCTTTCTTGCTGGAGACAGAGTTTTGAAATACCTTGGGAGAGCATTAGACAATGAGAAGTCGTTGACAAAAATGTTAAGTGTTGGACCAGATGAACATCCCACAGCTGTAGATCGCATTCAGACTTCACTGAAGTCTTTAAATAAGAATGCCAAGTCTCAGTTGAAAGAACTTGCTCAGTTAGAAGCTTACCAACTGAAGGCTTCCAGTGAGGAGAAAAAATACTTCTACATCCACAGAGAAAATGGAGACATGGAGTACATGAATACCTTGGTCAATGGACTTTCAGATCAACATCTTCCTGTGCTGGTAACTGTTGGACCTGATAAAGGACCAGGCCAGTTCCTGCTGGTTGGAGAGGAAAAGCAAGTGTCTCAGATAGGACCAAAAATTGCTTCTGTCCTGGATGGTAAAGGAGGAGGTAAAAAAGGTAGATACCAAGGGAAAGCCAACACATTGAAGGCAAGAAAAGAAGCTGAAGAGTTACTCGTTCAATTTACTTCTGTGTCGATAAATGAAGGATAATTTTTCTTTTTTACTTTACTTAAAACGCTTGTTCTCGAAGCCAAGCGATTGATTCAGAAAATCACGACCCTCTAAACTATAACCGCGTTGCTTGAAGCCTGCTTATAGTGTCAGCCTTTTTTTCAAGAAACAGTAAAGGAAATTGTAAAAGAGTGTCAAGGCGTTTAAACAGGGTTAGTTCTTATCATGCTTTGATTGGGCTACTTGACCCAGTTTACTTCTGCTTACTTGGCCCAGTCTACGTCTGCGAGAAAGCAGGGTTTAATACGTCTTTTTACCTTTTTTGCTGGACGTGACTTCGTAGGACCAGAGTTAACTCTGGTAGGACGTATCGATCCTGACTGCAGAAGATGCGGACATTACAAACCATCTTCATATTTCTTTGTTCCACTTTTCTCTTGGACTCTTAGGGTTGTCGAACCCTAAGAGCTAAAATTATTCTGTGTGACCCAGAAGTAGTTACTAAAAAGAAACAAATACTAAGTGGGAAAATTGAGTTGAACGCCCTGCCTCACTTAGAAAGTTACAAGCAATTGTGCTTTCAAGAAATCTCGTGTCATCTTTGCTTTCACTCTAGGTGATATCCTAGTTATTGAGGTTAAGAAGGTTGATCCTTGAGCATTAGTTCAGTCAGAAAGTCTGTTGAAATCTTGAAATGAAAGGGGGGTTTATGTCATTTTGTCAAAAATGAACTTCTGAAGGATGCCAAAGAGCTTGTGAGTCCTCAGCAACTAAACTTTTCCTTCAAGAACGTATCAAAATAATTGCTTTTATTTGAAATTGTAGTGAAAATTACATTTTGTTTTCATAAATTTATACGTTTCCAAGTGGAAACAGAAGTAAGATAACACATGAAATTCACGAGCTGTGAATCAATAAATGCTATGACATTAATGTTTAATGAGCTGGCTTTTTTGTCTGAATCTCGGCTAGTGATGTTTTGTTGCCTTCCTTGATCCCTTTTTAGCCTTTGTTATTTTAGCTTTCTTGTGATTATCTTTTTGTTTATGTTTGCCATTGAAATTTCGCCTAAAAGCCCCATTACTCTGATCTTGAAATTCCGGCATTCCTCCCATACCCCCTTCCCCATTCATGCCATTACCGAAACCCCCATCTATTCCCATGGGGCCCATTCCTTCCGATCCACCTGGCATATCATTCACTGGCCCTGTGGGCATATCCTGCATGGATCCCAGGCCACCTGCTCCTCCCGCTACGTCATCCATCTGGCCCATTCCACCTTGTTGTCCTGACATATCATTCATTGGTCCCATTCCAATCCCCAGTCCACCCATCATATCATTCATTGGACCCATTCTTCCTGGTCTACCTTGCATATTTTGCATCTGACCCATTACTCCATTATTTCCCGGCATTCCTTGCATCTGATTCATCCCTTGCACGCGTCCCATATTTCCCATTCCATTCATTCCGGCCATTCCTCCCATCCCCATCATTCCTCCACCACCACCTCCGTTGGCATTTTTCCAGGCAGCCGCAAATTGATTTTGCATCTGTTTTTCAATGGCCGACATTGCTTGTTGTTGCATTTGTTTCATTGCAGAATTGTAATACATCTCAGGCGTGACTGCATCAGTGCTTGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DEJ5	Alanyl-tRNA editing protein Aarsd1 OS=Danio rerio OX=7955 GN=aarsd1 PE=2 SV=1
Q7ZYJ9	Alanyl-tRNA editing protein Aarsd1-B OS=Xenopus laevis OX=8355 GN=aarsd1-b PE=2 SV=1
Q08B09	Alanyl-tRNA editing protein Aarsd1-A OS=Xenopus laevis OX=8355 GN=aarsd1-a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004560 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07973 all species →	tRNA_SAD	Threonyl and Alanyl tRNA synthetase second additional domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051335 all species →	Family	Alanyl-tRNA Editing Enzymes	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR018163 all species →	Homologous_superfamily	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily	Interproscan
IPR012947 all species →	Domain	Threonyl/alanyl tRNA synthetase, SAD	Interproscan
IPR018165 all species →	Domain	Alanyl-tRNA synthetase, class IIc, core domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43462 all species →	ALANYL-TRNA EDITING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002196 all species →	Molecular Function	Ser-tRNA(Ala) hydrolase activity	Interproscan
GO:0006450 all species →	Biological Process	regulation of translational fidelity	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0043039 all species →	Biological Process	tRNA aminoacylation	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004813 all species →	Molecular Function	alanine-tRNA ligase activity	Interproscan
GO:0006419 all species →	Biological Process	alanyl-tRNA aminoacylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07050	AARSD1, ALAX; misacylated tRNA(Ala) deacylase	EC:3.1.1.-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.