Detailed information of FUN_026723-T1 in Siderastrea siderea

Genomic Location: contig_26:3108545...3125421
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10613
all species →		Lig_chan-Glu_bdLigated ion channel L-glutamate- and glycine-binding siteDomainInterproscan
PF10562
all species →		CaM_bdg_C0Calmodulin-binding domain C0 of NMDA receptor NR1 subunitDomainInterproscan
PF00497
all species →		SBP_bac_3Bacterial extracellular solute-binding proteins, family 3DomainInterproscan
PF01094
all species →		ANF_receptorReceptor family ligand binding regionFamilyInterproscan
PF00060
all species →		Lig_chanLigand-gated ion channelFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019594
all species →		DomainIonotropic glutamate receptor, L-glutamate and glycine-binding domainInterproscan
IPR001508
all species →		FamilyIonotropic glutamate receptor, metazoaInterproscan
IPR015683
all species →		FamilyIonotropic glutamate receptorInterproscan
IPR018882
all species →		DomainCalmodulin-binding domain C0, NMDA receptor, NR1 subunitInterproscan
IPR049873
all species →		DomainGlutamate [NMDA] receptor subunit 1-like, N-terminal LIVBP-like domainInterproscan
IPR001638
all species →		DomainSolute-binding protein family 3/N-terminal domain of MltFInterproscan
IPR001828
all species →		DomainReceptor, ligand binding regionInterproscan
IPR028082
all species →		Homologous_superfamilyPeriplasmic binding protein-like IInterproscan
IPR001320
all species →		DomainIonotropic glutamate receptor, C-terminalInterproscan
IPR049872
all species →		DomainGlutamate [NMDA] receptor subunit 1-like, ligand-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18966
all species →		IONOTROPIC GLUTAMATE RECEPTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0015276
all species →		Molecular Functionligand-gated monoatomic ion channel activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005216
all species →		Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811
all species →		Biological Processmonoatomic ion transportInterproscan
GO:0038023
all species →		Molecular Functionsignaling receptor activityInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K05208GRIN1; glutamate receptor ionotropic, NMDA 1-Ion channelsko04040deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_026723-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
58TPM > 0
7Conditions
284.3Max TPM
76.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 13 74.54 284.28
holobiont · low.pH Control.temp 20 9 56.06 208.55
holobiont · control.pH_high.temp 20 17 98.23 247.55
holobiont · control.pH Control.temp 19 13 98.23 280.20
Whole organism 4 4 11.05 14.20
unannotated 1 1 10.74 10.74
live coral tissue/skeleton 1 1 16.04 16.04

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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