Detailed information of FUN_026815-T1 in Siderastrea siderea

Genomic Location: contig_26:4293788...4355479
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16574
all species →		CEP209_CC5Coiled-coil region of centrosome protein CE290Coiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026201
all species →		FamilyCentrosomal protein of 290kDaInterproscan
IPR032321
all species →		DomainCentrosomal protein of 290kDa, coiled-coil regionInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18879
all species →		CENTROSOMAL PROTEIN OF 290 KDAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0034451
all species →		Cellular Componentcentriolar satelliteInterproscan
GO:0035869
all species →		Cellular Componentciliary transition zoneInterproscan
GO:0097711
all species →		Biological Processciliary basal body-plasma membrane dockingInterproscan
GO:1905349
all species →		Biological Processciliary transition zone assemblyInterproscan
GO:1905515
all species →		Biological Processnon-motile cilium assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16533CEP290, NPHP6; centrosomal protein CEP290-Cilium and associated proteinsko03037deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_026815-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
7TPM > 0
7Conditions
90.8Max TPM
1.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 1 4.54 90.81
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 9.57 11.01
unannotated 1 1 3.21 3.21
live coral tissue/skeleton 1 1 10.47 10.47

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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