Gene detail

Detailed information of FUN_026920-T1 in Colpophyllia natans

Genomic Location: contig_61:545547...560052
NR annotation: XP_022778807.1, cleavage and polyadenylation specificity factor subunit 6-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_026920-T1

GGTAGCCATCTTGTTTCCGTTCAGCGTGCTGGTGGCTTCTCCGCAAGAAATTTGGCATTATGGCTGGCGAGGGAGGCGTTGATATCGATTTGTATGCTACAGTGGATGAATTTGAGCCAGAAGTTGCTGGTCAGCATCATATGACTGAAGGTTTGGACTTGTATGATGATGTACTCACTACTTCAGGGCCAGCAGAAGATGAGGCATTGCAGTCACATTATGAAGAAGACGTCACTGGTGGCATTTCACCGGATGCAACCCAGTCAGGAGCCTATGAATACAAATCCTACACCACAGTCCATCCTAAATCCGTGGCTGCACGAACGGCACATACCTACCATGAAAGGAACAAAGGAAAGCCCCTTTATGTGGGCAACTTGACGTGGTGGACAAATGATCAAGAGCTGACAGAATTCCTGCAAGAGTGCGGTGTAACAGATCTGATAAATATCAAGTTCTTTGAAAACAGAACCAATGGGCAGTCTAAAGGCTTTGCAATGATTGAACTTGGTTCAGACACTTCAGTACAACTTGTCACAGAAAAATTACCAAAAATGGAGGTTCATGGGCAATTTCCAGTTGTGACACCAGCAACAAAACAGTACTTACAGCAGTTTGAAGCTCAGTCGAGGAAAAATAACCCTGGGACTATGGGAGGGTCACATGCAGAGCAGGATGGTCCAGGATATCAACAAGGTGGCAGAGGGTTCGGTTACAACCGTGGAGGTTTCAGAGGGCGCGGTGGATTCCCTGTGCGCCCAGGAATGGGACGAGGGTTTGAGCATGGACCGCCACCAGGAGAGATCCATGGACGCGGAGGCCCCTGGATGGCACCAGGCCATATGGGAATGCCGAGACATCCTGTTCCTGGGATGCCACCTTTTCATGGTGAACATCCTCCTGCTTACTACCCAATGACAATCCCTCCCCCTGGAGAGAAGCCACTTGGTCCCATGCCACCTCAAGCACCAATGCAACCCCCGCCACCTGGAGCTGGTCCATTACCATCAGATCACAGAGGACATGTAGGTATGGTTCCACCGTTCCCCAAGGCTCCTGTTGCACCCCATGTGAATCCAGCATTTTTTCCAGAAGGGCCACCGCCAGAGACATTCCTTGCAGCTGGGGGTGCAGCCAGTGCCAGTCGAATGGACATGATGGCGCAGTTTATGCCAAGACCAGGTGACGATTTCAACGAGTCCATGAAGAGAAATCAGATGCTTGCTAGTAGCGCCATCAAACGAGCTATGTCGGACGCCAATGCTGGCGACTACGAGAGTGGAATTGAAACCTTGGTTGGAGCAATATCTCTTATTAAACAGTCACCAACAGCTGCGGAAGAACGATGCCAGGTGCTTGTTCAGTCGTTACAGGATTGTCTTCAAGGACTGGAATTACAGCTGCTAGAAAGAAGGTCGACAGGGAGTAAACATCATTTCAGTGACAAGGATGAATACGAAGGCGAGACCAGGGAAAAACGACACAGACGAAGACGGTCACGGTCAAGATCGCGTGACAGGAGCCGGAGGTCGAGATCACGCGAGAAGCGCTCGAGATCGCGTGACCGAGAACGTCACCGCCGTAGATGAAAAAGTCCTGTGTGAAAAATGTTATATAAAGTTGTCTAATGTGGTGGTCGAGACTACGTTTTGTAACCCCATGACTGTAATCAGTCATGTAGCTCTGCTCCATTGTAAAATAGTGAAGTGTCCGGTCTTCAACTCAGTTACTTGgattgtcacgcaacgctctcTGACAATCGTAGCGTGACAACTCATATGATGGCTGAGCATTTGCTCGTCTCGTTCACAAGCTGCAAGagtgtttctgttttattgttttcctttgtgcTCCATTCCTTGTGTAGAACTTACGTGATAGTTGCTAGGAGTTTGTTGCAACTTTTAAACCCTTCAGCGTGTCTTCATTTCGCTGTTTATATACTATTGGTTTCTGTACAGACTCTTTTTTTACCAGCCTTATTTGAGgttaataaagaaatttaactGTAAAA

Protein

Uniprot

Uniprot term	Description
Q6NWC6	Cleavage and polyadenylation specificity factor subunit 6 OS=Danio rerio OX=7955 GN=cpsf6 PE=2 SV=1
Q5ZL34	Cleavage and polyadenylation specificity factor subunit 6 OS=Gallus gallus OX=9031 GN=CPSF6 PE=2 SV=1
Q9VSH4	Cleavage and polyadenylation specificity factor subunit 6 OS=Drosophila melanogaster OX=7227 GN=Cpsf6 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034772	Family	CPSF6/7 family	Interproscan
IPR034769	Domain	Cleavage and polyadenylation specificity factor subunit 6, RNA recognition motif	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23204	CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005847	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0098789	Biological Process	obsolete pre-mRNA cleavage required for polyadenylation	Interproscan
GO:0110104	Biological Process	mRNA alternative polyadenylation	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14398	CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7	-	Messenger RNA biogenesis	ko03019	deepkoala