Gene detail

Detailed information of FUN_027108-T2 in Colpophyllia natans

Genomic Location: contig_62:435468...446197
NR annotation: XP_029211667.1, tetratricopeptide repeat protein 8-like [Acropora millepora]
Species abbreviation CNATA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_027108-T2

CGCGGATTGGAAAGAAAACGCGTCGCCGGTAAGCGTCGCGTCACTCAAACCTTCACCAACAACGAGAAATTTAAATGGAAATAGTATAACACTTTTGGAATAATTGATCGGTGTATGAGAATCAGAGCAGAATACGCAAAAAAATGCCCTGCAGAAAGGCAGATATCACAGGATACTTTTAAAATTTCGCGGGAAGTGGTACCGCTGTCATGACAACAAAAATCCTGAGCCAGCGATAACACCTATGGAAaatcatccaagatggcgactaCTGGGATGCAGATGGACCCGCTGTTTTTGGCAATGAGTTTTTATCGTCGCAGAAAATTTGAAGAGTGTGCAGAAGTTTGTACACAATTACTGAAGAAAAATCCTTATGACCAGGCATCATGGTGTCTTAAGACACGCGCGCTCACGGAACAAGTTTATGTTGACGAAGTTGACGTTGACGAGGAAGGAATCGCTGAAATGCTTATGGATGACAACGCTGTTGCCCAGTTACCACGCCCAGGAACTTCATTAAAGAAACCAGGAACCAGCACTGGGATGGGAGCTCCTACACCAGGCGTTAGACCAATGTCTCAAGCAGGCCGCCCAGTGAGCGGATTTGTTAGGCCAGGAACACAGAGTGGAAGACCTGGAACTATGGAGCAAGCCATAAGGACACCCCGCACAGCACAAACAGCAAGACCAGTGACAAGTGCTTCTGGTCGACATGTTCGTCTTGGCACTGCATCCATGTTGTCGCAGCCAGATGGACCATTTATAAATATTGCAAAACTAAACTTGTCCAAATATGCACAAAGGCAAAATCTTGCAAAGGTTCTGTTTGAATATATTTTCCACCATGAAAATGATGTTAGAAATGCATTAGAACTTGCAGCCAAAGCAACTGAAGAATGCCAGTTTAAGGACTGGTGGTGGAAAGTTCAACTAGCAAAAAGTTATTACAGACTTGGCATGTATCGTGATGCTGAGAGACAACTCAAATCCGCTCTGCGTGATCAAGATGTAGTGGATACGTACTTGTATCTCTGTAAAGTGTATAGAAGACTGGATCAGCCATTAACAGCTACAGAAGTATACAAAAAGGCTTTAGAGAAATTTCCCGGAGAAACAACTCTTCTGACGGGAATTGCACGCATTCACGAGGAGCTGAATGACATGACCAACGCTGTAAAACTGTACAAAGAAGTGCTTCATTATGACAATACGCATGTAGAGGCCATTGCTTGTATCGCTACTCATCATTTCTACACTGATCAACCAGAAATTGCTCTCAGATTTTATCGCCGCCTTCTCCAGATGGGTGTGTACAATGCAGAGCTCTTCAGCAATCTAGGGCTGTGCTGCTTCTTTGCTCAGCAGTATGATATGACGCTGAACTGTTTCGAAAGAGCGTTGGCTCTGGCTTCAGACgaaaacatggcggacgtttGGTACAACATCGGTCACGTGGCAGTGggTATTGGAGATATCCAGCTCGCCTATCAGTGTTTCAGATTAGCTCTTGCCTCGAACAACGATCATGCAGAGGCCTACAATAACCTGGGAGTCCTGGAAATGAGGAAGGGACACACGGAACAGGTAAAACCGGGATTGTGACTGGTTGAACTCTATACCCGTTTCTGATGTTCAATCCTGTTCTTTTCCAGGCCCGCGCATTCCTCCAGGCCGCTGCCTCTCTCGCTCCTCACATGTATGAACCTCATTACAATCACGGACTGCTTTCACATAAGATTGGCGACCTACAGAGCAGCCACAGTTCAATCAGTAAATCATTGGAAGGCTACCCGGATCACAGCGACAGCAAGGATGTGCTCAGCCAACTCAAGGAAGATTTCGCTGCTTTGTGAACTTTCAATAGACTAGACTCATTGTATTATACTGTACATAGATAATTCCTGAGCTCTCTTCTCCGCAGGTTTTTTTTCGAAGGCGCATGGTTACGTGAAGGGCGATTCATTCGCGTTGCGCCTGCACTCACCTCACACAGCGGCTTTCTATAACGAATGTTTTGAAACTCTGTGGAGCAGAGAGATTCCCGAGGGCGTCCGGTCTCGGCGAATTTATAAGTTAAATAAACCATTCATTTGCAACTGCTAGCTTTGCCTCTGCCGTCATTCGGAACTTCGAAGGCATGGGGTCGACTGAACGAAACCTCATAAACAGACATTAAACTGACACGTTTCGTAGACTTTGCTTCCCTTCGTGTCACGCAGTGTTTCGAAATTTTGATACAAGGGGAAAACTGTGAAACTGTGAAAGGCCACAATCCCTTTGGTGATTGCCAAAAATGTCAAGAATCAGCCAGGCATTAATCACTAAAAACTTATTAGGACTGGCTCCAAGAGAAACAGTGAGTTCTGTTTCTCCGAGACCCTCTATGTTCCTCTGGGCCTTGCCTCAGGGAACATCGAGGTCAAGGGGAAActaaactcactgtttcccgtTGGGCTAGAACTCAAAAATATAAAAGGCTGCgaaaaatttatttacttaACTTCAGCTGGGACAACATATTTTCCGGAGTTTCAAGGTgcacgacctgatcacgtgcACGTAGAAAGTTCAAGTTGTGGTTTCCCTAAAAAGTTAGTGAGCTTTGTTcaccctagggagttagtgagatCTGAGCCACGACTTGTGACACGTGACACGTTTTTCTCCAATCAGACAACATTTttagttgggaggtataacaaagcGGATTCTCTCTTAAGAATTTTCACAAACCATCATGAGCCTTTGATGTATGCATGTTTTGAAACTGGCCTCTAAGGGTTTAATGTacataacaataaaatagccTGTGATGACAGCAGTGGGAAGTATCCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VD72	Tetratricopeptide repeat protein 8 OS=Mus musculus OX=10090 GN=Ttc8 PE=1 SV=1
Q8TAM2	Tetratricopeptide repeat protein 8 OS=Homo sapiens OX=9606 GN=TTC8 PE=1 SV=2
Q23049	Tetratricopeptide repeat protein 8 OS=Caenorhabditis elegans OX=6239 GN=bbs-8 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005424 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR028796 all species →	Family	Tetratricopeptide repeat protein 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44177 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0034464 all species →	Cellular Component	BBSome	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0097730 all species →	Cellular Component	non-motile cilium	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16781	TTC8, BBS8; tetratricopeptide repeat protein 8	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.