Gene detail

Detailed information of FUN_027185-T1 in Dendrogyra cylindrus

Genomic Location: contig_63:710017...713452
NR annotation: XP_020632268.1, uncharacterized protein LOC110069139 [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_027185-T1

ATGGCGCGCCAAATTGGCACACTTGAAAAAGAGTTTTCTAACTCCTTGTCAAGAACTCTCGACTGGTTGGGAAGGCGTGAGAAGTTGTGGTGTTTGGTCGTTGACAATCTTGACGAGCTAGAAATGTCTACGGACATGCGTAAGCTGCTCACTGGCCACTGGAAACAAGCGGCGCGGGGCAATATTATCATAACCACCAGGAGAGAAGCGACGGAAATCGGAGAAGAAACGGGAATCGAAGACAACTTTTGCATTGAGTTGAAATGCTTGGCAGAGGAAGAAGGAATTCAGTTTCTACGAATGCGAACGGGAATAGCTGGAGAGGAAGACAGCGACATTCGTGAACTGGTGAGGGAGCTTGGTGGACTTCCTTTAGCTCTCGATCAAGCTGCAGCCTATATACGATGTGTTCATCAGCCCATAAAAGAGTACGTGAAGAAATACAAGAAGCAAAAAGTGCTTCTCCTGAAGAAGAAAAAAGCTCGGCATCTGGTGGAAAATACCTCACCTGAGCGTTTGGCAATCCACACTACATGGTTGTTGAATTTTGATCACATCAGTCAGATCTCAAAAGACATGGAGCTTGGAGAAACCCCAACTCTCGTAATGAAAGTGTCCGCCTTTCTCGGTCCCGATGATATTCCTTATGAAGTGATCAATGAAGGGCTGAACAAAGTGGACGATACTGGAGCAGTCAGCGATTTGTTGGACCAGGCCGAGATTGTCTCTCTCCTTACTAAGTTTTCCCTTTTTCAAAGATATGGGGCACATTCCTTCAGTGTTCATCGTCTGGTGCAAGAAGTTATCCGAAGTGAGATGGAGAAAGAACAAAATGAGTTGAGTGTTCTTTCTTGTGCGGTACGTGTTCTTCACCATGCATTAGCAAATACACGTTCACCGGCAGAAGTGTGCGAAAGTTTCGTTGAAGATGCTGTTTTTAGTGTCGAGAATCCTCCTTCCTTACAGCTATGGGGAAAGTTGGCCTCCCATGCCTCGTATTTGCAGGAGCATTTGCGCAGCTTCTCAGCAAAACATAAAGAATCAGTCCATACCTTGCTATACACAGAGGAAACCGTGCGTATCTTTAATGAAGCAGCGATATTTTTCAGTGTGTCTCAGGAGAAAGTCAAGGCCCAGGCAATGCAAGAAATGAAATTAGAGTTCCTAGTACACATCGAGAAGTCATCCTCTGGGGACGATTCCAGTTTGCCGCATTATTTCATTGATGTGCCTCTGAAGGACAAGGACCACAAGGTGATATCGTGTTGTATGAGACAGCCTCTTCTTGAATACGAGGCACTGGCTGAAGCTCTGGATTCCTgtcaaaatgaaaatgaagaggAAGCCGACCAGCTCAGAGGAAAAGGAAACCTTGCAGTAAAAAGCAACATGTTTAAAGAGGCATTAAATCTTTATTCCACAGCTATTGATGTGTCGTCTAACGACTATCGGCTATTCAGTAACAGGGCTCTTTGCTATTTGAAACTTCGTCAGCCACAGAATGCCCTAAATGACTGTGAACAGTGTCTTTGTTTAAAACCCTACTACAGTAAGGCACTACATCGCAAGGCTTGGGCTCTCCATGAACTTGTGAAAGGTGGATGCGATCACCTAACAGGAGCTGAGAGAGCAGCGTCGGCATTAGCTGTTCATTTTGATAACGAACTACTTCAggacaaaatgttttgtaaaatgtttCCTGAAGAGCGGTACGTGTACAAATTTGTTGGTCTCGGTTCCAAAGTTGTTTTAAAGTGCACAGAGGCTTGTTCTGTTATTGATGCCAAGTGTTACTTTGAAAAGATTGTTTTCCCGAAAAATAATGCTTCTCTGGAATGTCAAGGAAAGAGTGGAGCTGTTCTTCTTAACCACTGTGAAATTTCAGGAGGATCTACAAGTTGTGAGGATTTTTCAGATTGCAATGGAGGGCCAGGATGCATAGCAGCCTCTAGAGGAGAGCCAGTGTGTGAACGCTCTCACAAATTTGGAGACCCGGATTCGCAGTCTGGTATTTTTGGTTTTTCCGGGGTCGTGCTGTTTAAAGGTAGCTCAGGCGTAGTCGAGAATTGTTTAATTCATGATTGCGGGGGCGGAGGCGCTTTAGTCCTCCACGAAGGATCTCGTTTAACGGTAAAAAAATGTGAGGTGTACAAAAATCATCAAGCTGGATTAGAAGCACGGGCGGGTGGAAAACTTGTTGCAACAGAGAACAGAATATTTGACGGTGGTTATCATGGTGTCTTGATCGGTCCGAAAGCTGGAGAATCTATCATCGAGAATAACAAAATATTCGAAAATTCAAAAGAAGGAATTATAGTGGGAGAGACAAACAGCAATGTTATCATAAAAAACAACGACATTCATCACAACCGACCGTTTGGTATTTCCCTCCATGAAAATTCACGGGTTTTAATCAgtaacaacaaaatatttgagaatgGATTTTGGGGTATCCTCGCCAAAGCACGGACGTCAGCGCATATAACCGGAAATGACATCTCTGGTAATAAATGTGGTGgcattttcattggtgtcaactaTTCCGGACGAGTTCATCTTGAGTCAAACACTGTTCGGGATCATAGTGGTCCGTGGCTCGAGTATCAAAACATGACGGGTAGCTTTTCCGCTGAAACCAGCTTACTCGGTGaagtttttgcttgtttttcacAGGGTCTTCCACAGGGAGAAACGGGGGCTCATTCTTATCCGCCAATTCTCGACGGAAACAAAGAATTTAACAATGAAGAAGGAATGTATCATCCCAGAGAGGTTGCTGAACGACTGTACAGCGGCTGCACGTATTGCCGTCGCTCAAGAGATGAGGTAGAGCGCCTCATAATGTGCGCTAATTGTCACATTGCATCTTACTGCTGCAAGGAATGTCAACGTAAGCACAGACCCAAACATGAGACATTATGTTTCGCCCTCAAAAGTCGCTATTCTGTAACAGTAGACCTTATCCCTTCAGTGGAGCCAGGAATTTCCTCAGTGCGAACATTTGGAACCCATTTAAAAGGTATTGGAGAGGGCCCAAAACCCAAACGCAGCAGTCGTCAGACGTTCATCGTTAAGATTCAAAGCAGTAATCTAAATAGTCACCCGCTGCAGTTGCTGGGCATTTATGACAAAAGCCTAAAAATAGATTGCTTCATCCAAAGTCCAGAAATCTTCAGTGTAATAATGGAGTGTGGTGTTCTTGGGTCTTTACAGAAATTGACAAGCAAAAAATCTTTTTTCCGGGCCATGTTTGCTGAGGGAGGAGAGAAGCTAACGGTTTTCCTCGATCATTTGGCTCCTTATCAAGAGTGGTAA

Transcript

FUN_027185-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07617	Sperm-associated antigen 1 OS=Homo sapiens OX=9606 GN=SPAG1 PE=1 SV=3
Q80ZX8	Sperm-associated antigen 1 OS=Mus musculus OX=10090 GN=Spag1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000290 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01753 all species →	zf-MYND	MYND finger	Domain	Interproscan
PF13229 all species →	Beta_helix	Right handed beta helix region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006626 all species →	Repeat	Parallel beta-helix repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR051550 all species →	Family	SCF Complex Subunits and Alginate Epimerases	Interproscan
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR012334 all species →	Homologous_superfamily	Pectin lyase fold	Interproscan
IPR039448 all species →	Domain	Right handed beta helix domain	Interproscan
IPR022441 all species →	Repeat	Parallel beta-helix repeat-2	Interproscan
IPR011050 all species →	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22990 all species →	F-BOX ONLY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_027185-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.