Gene detail

Detailed information of FUN_027207-T1 in Dendrogyra cylindrus

Genomic Location: contig_63:972224...978973
NR annotation: XP_020632087.1, F-box/WD repeat-containing protein 7-like isoform X1 [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_027207-T1

AAGATATCGGccgacaagcgacagccggaaatacgtctgcgttcacAGGCTACAATGTAGAAGGTCGCATAATTCACTAAAAAATCCAGTTTTTAGTGGCTGCAGACTGCGAAACATTCAGTTTCAGGCTCACTCAGAGTGACTCAGCTAGTGCGCTGAATTGCTGTAGCAAATCTGATGAACTCTCCTGAACTGCCTTTGGAGGTGATAGACGAAATACTGAAGCGTCTAGATTCTATTTCCCTCGCGAAATCTCGGCAAGTGTGCCGTTCATGGCGGGATTTACACTCCCAGCCGCAATACaagctgttgtggaaacaaGCTTGCTTCAGAGATATTGATAAAGATGTGCTGACTGAATTAACTGGAAACAGATGCATAGCTGCAGACGATGATTCAGGTGGTTTAAGTGGTACTAGCAAAAACATTCAAGGAGAAAACATTGGTATCGATTGGGAAGCCATTTATAAGAAGTGGTTTAgaggccgccatattggaagaTGGCCTTCCATGGTAACTGAACTCAAGGGCCACAAAGGTCCAGTTTATAATGTCAAATTCTCAGGCGACCGCGTGGTAACCTGTGGTGATGATGGTACTATCCGCATATGGGACAGCTGGACAAGTCACTGCCTTGTAGTTCTTGCAGAGCACAATGGAGCTGTTCTCTCAATCTCTTTGAGGCAAATACCAGgtttGTCAGCTCAGGCAGATATCCCACATGATCTCATTGTATCAGGCTCAGTCGATTGTACAGTTAAAGTCTGGGACATGAAGACCCCATCTGTCGCAGCGGTATTAACATGCCATGGTCATACCAATTGTATCTACAGTGTTGCTGTCAGAGAGAATACTGCAGCCTCTGCGTCAGAAGACTGTTCTGTTAGAGTCTGGAACATTGTTACAggTCACTGTTGTCATACTCTGAGTAACCTTGGTGACTGGGCGACTCACGTGAAAATGGGGCTATGTGATACACTGCTTTCTGTTACTGGCAGCAGCCAGTTGGGTTTGTGGTCCACTGAACGTGGGGAGCTTTTGTCATCTGTTAATCTAACAGATACACTAACTCACGACCTTTTTCCAGTGACACCTGGGGTTCAAGATGTTGCCTTGAGGGGTAAAACAGCTCTGATCATAACTTGCTTAAATGGACTTTGTGTCTGGGAGAATAGATCAGATGGTGGCAGTGTTGTGTACAACTTCTCTTTAATTGATCCGCATTCTAATGGCGTCAAACAAGGAGAATGTTTGGCCATGCATGGAGCCTTGGTTGCCATAGGGACAAGGTCTGGTGCAGTCTATGTATATCACCTTAATGGGAACTGGGAAAATCAGTTCACTAAGGTTCACTGTGTGCTGCCTGGAGATGGATCTCTAATCAATGCAGTTTCtattgatgatgatggtgaagGCCCTTCCCTAGTCACTGGAGGAGACAATGGTGTTGTTAGGGTTTATCGCTGGTTCCCACCTAGCATTTAGAATATTTAATACGTACTGGGTTCAGCTTTCTTTTGATGCAGCTGATCAACAGATTAAGTTTCTTTTGATGTCATACAAAAAAGAATGAGCTTCTTAGGTCAAAGTTGACCACAAAGTGTAACCTTTCATGGGGAAAAAAGTTTGTTCCTTGTAAGCAAGAATTTGTAAGGATGGTCGGGTTAAGAAATGACCAGGTTCACAAGGTTTGGTGATTACTTTCTGCCTAAGCTGGAAACTAGCAACAAAGTGAGATGTCACAAATTAATTTCAAGTTCTGTTACATGTCATCGGGCCAATTCAGGTGTCAGATTGCGCCTGAAACAGCCTTTTGGGTGATTCACAACATCACAGTTGCACCATATTTATTAGGTTCCGTTGCAGCCATTTTTTGTATGACATCCTGAAGAATGGCTGCAAATTATTCACATACTTCATAAGACATGACAATGTcaagatttttcttttgttgtcaCGATCAATCAAATATAAGcaagagtttaatttttatatatttaatgCAATAAACCATTATTTAATATTAAATGCTGGGCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P07834	Cell division control protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CDC4 PE=1 SV=2
Q8R537	Peroxisomal targeting signal 2 receptor OS=Cricetulus griseus OX=10029 GN=PEX7 PE=1 SV=1
P97865	Peroxisomal targeting signal 2 receptor OS=Mus musculus OX=10090 GN=Pex7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009394 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00646 all species →	F-box	F-box domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22847 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_027207-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.