Detailed information of FUN_027233-T1 in Siderastrea siderea

Genomic Location: contig_26:9127175...9135126
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05995
all species →		CDO_ICysteine dioxygenase type IDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR010300
all species →		FamilyCysteine dioxygenase type IInterproscan
IPR011051
all species →		Homologous_superfamilyRmlC-like cupin domain superfamilyInterproscan
IPR014710
all species →		Homologous_superfamilyRmlC-like jelly roll foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12918
all species →		CYSTEINE DIOXYGENASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005506
all species →		Molecular Functioniron ion bindingInterproscan
GO:0008198
all species →		Molecular Functionferrous iron bindingInterproscan
GO:0016702
all species →		Molecular Functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygenInterproscan
GO:0017172
all species →		Molecular Functioncysteine dioxygenase activityInterproscan
GO:0019448
all species →		Biological ProcessL-cysteine catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_027233-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_027233-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
69TPM > 0
7Conditions
422.7Max TPM
122.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 19 175.15 334.86
holobiont · low.pH Control.temp 20 12 81.23 221.90
holobiont · control.pH_high.temp 20 18 141.54 422.70
holobiont · control.pH Control.temp 19 14 116.08 328.45
Whole organism 4 4 39.28 49.03
unannotated 1 1 35.65 35.65
live coral tissue/skeleton 1 1 75.42 75.42

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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