Gene detail

Detailed information of FUN_027456-T1 in Acropora pulchra

Genomic Location: ptg000021l:5256129...5275349
NR annotation: XP_044174688.1, uncharacterized protein LOC114949010 isoform X4 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_027456-T1

ATGGCAATTCCTACGCTTGAACAAACTTTTCCAAGATATTTGACTGAAGGCATTGACCAAGAGGGCTTTGAAGAAAGATTCATCAATGACTTTATAGGTAGAGGACTGTTTGCAACAAAGAAGTTTTTAAAGGCTCAGTTTCTCCTGGAATACAAAGGAGAACTTATCACGCAGGCTGAAGGATATTCAAGGGAAGAGTCTTATGATGCAGAGTTCGGAAGCTTTCTCTTTTTCTTCAAAGATGGTTCCAAGTGTTTTTGTGTGGATGCCACATTCTCAAGTGGGCTAGGTAGGCTTGTAAACGATGCGTTGCCTAACAAAGCCAATTGCAATTGCGTGATGAGAAAAATGAAAGTTGGATCAAGAATACATCTTGCACTTTATGCACTCCGGGATATCATAATTGGTGAAGAACTTCGCTATGACTACGGTGTGAAAGATCTTCCTTGGCGCAGTCTACGTGCAGAAGGCATAACAGCAAGCAGTGATAGCAGTGCCAATCTGGAAGAGCAGAGCAACAAGAACATGGTGAAAATGGGTCACAGCAGTGTCGGCACTAAGTTAGAGAAAGACAAAAGTGGGGAACACAGTGGCGACAGCACCAATATGGAGGTTCAAATGGAAGGAAGAGCAGCGAGCAGTGATAACAGTGCTAACCTGAAAGAGCGGAGCAACAAAAATAAGAGCATGGTGAAAATGGGTGACAGCAGTGTCAGCACTAAGGTAGAGAAAGACAAAAGTGGGGAACACAGTGGCGACAGCACCAATATGGAGGTGCAAATGGAAGGTAGAGCAGCGAGCAGTGATAACAGTGCTAACCTGAAAGAGCAGAGCAACAAAAATAAGAGCATGGTGAAAATGGATGACAGCAGTGTCAGCACTAAGGTAGAGAAAGACAAAAGTGGGGAACACAGTGGCGAAAGCACCAATATGGAGGTGCAAATGGAAGGCGGTGACAACAGTTGTGATAGCAATTGTACTCGCCTTCATTTGCAGAGTAACAAGTGCAGCCTTACCACCAATGAACTCTTTCCAGTAAATATATCAACCTCTCCAGATATCTCTTTTATGAATCAAAACAACTGCCTTTCCATGAAGTCTTTTCAACGATTTCAGCAATGGAAACTTGGCTTAAAACAAGAAGAATGCTGGATCAATGACGAGGGAAAGTCAGTTTATATCTTCAGCACATTTTTTCTACAACACTGGAAGAGGTTTGAGAAACACACACCAGAAGCGATTCTTCAATCTGTTTGTCAGGTCAATTTATTGGAGAAAGAGAAGTGGGTTATTCCTGTCAACGACCGAGCTCATTGGAAAGTCATTATTGTCAACCTGATCACCAAGGCACTGTGTCTTTATGACTCTACTGAGTGTGCAGATGATGATCCTGTAAATGCTGATCACTTCCAAGCTATAAAAAACTTCATTCAGATAGCTTACAATTTTTGGGAGAAAACGTGGATTTCCCAAGAATGGAAGCAGGGCATTGCAAGAGAAACCCCAAAGCAATCGAATGCTTTTGACTGTGGAATATTTTCGTTAAAGCTTAAGACTGAAGAGGATGATGTCATTGGTGATACAGATGAAGGCGTTCAGCACTCTAATAGTAAAAGAATGTACAAATTGTCAAGAAAACGGCTAGTTTCCAGTTCCTCCGACGAAGACAATTATTCGTTAAATGTGCCAGGTAAAAGGAAGCAAAACGTAACAAGAAATCGGCTGTTTCCAAGTTCCTCCGACGAAGACAATAATTCGTTAAATGTGTCAGGTAAAAGGAAGCACAAATTAACAAAGAAACGGATGTTTTCCTGTCCCTCCGGCAAAGATAAAAGTGCGTCAGATGTGGCAGCATCTGTACGATGTGCTCAAAAAAGTGAATTCAACAGAAGAGTGTATGACAAAAAACAAGCCTGTTTTTACTGTGGCGTTTTGGTGTCTAAAATTGCAAGACGTTATGAGCTCAAGCACATGGCTGAAAAAGAAGTTGCCATTGCCCTTTCCTTCAACAAGGGGTCGCCATCGAGGAAAAAACATCTTGAGAAACTGCGGTTATTAGGGAACCATCATCACAATTTGACTGTAATGGAGACTGGGAAAGGAGAGCTGATTGTCTATAGACGTCCCACCTCTGGTAAAGGGTGCAACCGTTCGGATTTTCTTCCCTGCAATTTTTGCCTCGGGTTCATAAAGCGTCAAGAATTATGGAAACATGTTAAATCGTGCAAGTTCAAAGCAGACAAAAATGAAGTTCCAAAATACCAGAAGGTACAAGAAAAGGCAAAACTGTTGTTATTTCCAGCTACTTGCAGTGACAGCAGCAACGTACTATCTAAATTGTTCGCGGCCATGAAAAGTGATGAAGTCACTCTTGTAGCTAGAAACGATTGGCTAATCAAGGAACTTGGAGTGTTGCTAATTGAAAAGCATGGGGATAAACAAAATCATTTTGTTTCTCAAAAGATGAGAGAACTTGCAAGGCTCTTGCTACAACTTCGCACAACAAGTGCTAGTCTTGACGCCCAACTTTCCGATTTCATAAAGCCTGGAGAATTTGATGTCGTTGTTAGCGGTGTGAAAGCCCTTTCAAAATTTAATTCTGAAGACGGTGTGCGGCACGTGGCGATTCCATCATTGTCTTTAAAAATTGGCCATTCCCTCAAAAAGTGCGTTAGCATCCTCCGGGGCCATGCCTTGCGAAGAAAGGATAAGGAACTACAGGAAGATGTGGGCAACTTTGAAAAACTTATTGAATCAGAGTGGAACCATCGTGTTTCACATCATTCCCTCGGCGCTCTTGGCTCAAAGAAATTTAACAATGTGGAACTGCTGCCACTTGCAGACGATCTTGAAAAGTTGAGGACGAGTGTCCTTTCAATTATTTCATCAACATCAATTTAG

Transcript

FUN_027456-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q498E6	N-lysine methyltransferase KMT5A-B OS=Xenopus laevis OX=8355 GN=kmt5a-b PE=1 SV=1
Q24742	Histone-lysine N-methyltransferase trithorax OS=Drosophila virilis OX=7244 GN=trx PE=3 SV=1
Q4WTT2	Histone-lysine N-methyltransferase, H3 lysine-36 specific OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=set2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000276 (this species only)
Ubiquitin family	DUB\|ULP\|ULP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856 all species →	SET	SET domain	Family	Interproscan
PF02902 all species →	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214 all species →	Domain	SET domain	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR003653 all species →	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33480 all species →	SET DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_027456-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.