Detailed information of FUN_027595-T1 in Siderastrea siderea

Genomic Location: contig_27:5638085...5697261
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07989
all species →
Cnn_1NCentrosomin N-terminal motif 1Coiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012943
all species →
DomainCentrosomin, N-terminal motif 1Interproscan
IPR052593
all species →
FamilyMicrotubule-associated AKAP9-binding proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46501
all species →
MYOMEGALINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005815
all species →
Cellular Componentmicrotubule organizing centerInterproscan
GO:0005794
all species →
Cellular ComponentGolgi apparatusInterproscan
GO:0005813
all species →
Cellular ComponentcentrosomeInterproscan
GO:0007098
all species →
Biological Processcentrosome cycleInterproscan
GO:0060090
all species →
Molecular Functionmolecular adaptor activityInterproscan
GO:0090063
all species →
Biological Processpositive regulation of microtubule nucleationInterproscan
GO:1903358
all species →
Biological Processregulation of Golgi organizationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16542CDK5RAP2; CDK5 regulatory subunit-associated protein 2-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_027595-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
65TPM > 0
7Conditions
332.3Max TPM
52.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 13 42.66 161.18
holobiont · low.pH Control.temp 20 16 82.61 332.26
holobiont · control.pH_high.temp 20 11 26.14 104.77
holobiont · control.pH Control.temp 19 19 69.58 236.55
Whole organism 4 4 20.59 21.44
unannotated 1 1 9.27 9.27
live coral tissue/skeleton 1 1 14.99 14.99

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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