Gene detail

Detailed information of FUN_027654-T1 in Siderastrea siderea

Genomic Location: contig_27:6758576...6772163
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_027654-T1

tatttgcctgatcgaatctaaatgacatcctgatatgaatatcaaaaattatttttcgatttcgattttccttccccgcgcttttgccgtttaaaaacgtgaaattttacttccggtcatgtcaaaaaccgcgcaaagggagacctgggcatagtcacgttgtgacgtcataccaggaacggagtcaatgcaaaacaagctacgtgggccgtattgcggagatctaattcattttatttttatttattccgcaaccgccaaattgggcacgaaattatgtgaaactgctagtgttacaagtaatctgggcagtgatttggagcttttagagtccatcgaatgcgaatcgctaacttctgaagttgaaagcgaaacagaactcgagatcgagaaagaagctattcagaaccgaAAGGTCGTTACATAGACAATCCGCTTACCgatgaaaattgacttagagaatactatcaagaggtagaggagacagcacgaagaaaacagaatctagaaaaaccTATTGGATGGTACCGTAGCGCTCGAGACGTAGTAAGAagtgccacgatttctcatcccccggtgtaaatattataattatgctcggctaaataaaccttgttcgcgctcggctaaataaacgcctgttatgcaggttatactttcatactcttagaggtgtagatgtggtaactgtgctttaaaccatctgcaaaacgccgtagatCGTCTTTGCTTCcaagaaattcagaaatgtgtcgaatctctaGAAGCGCCGTCGGTATGTTTCGCGCGAAGCCGCAAActtaacacaacaacaggatgtgtaacAACCTACCCGGCactgttcagtgttgtctgacttTAAAGctgatggtcgctacgatcagatgcagaaaatataatacgatagatggaagaaagtatcgttcagtagattggttcggaagagaagtgagtaatTCTCTACGTTtttgtggactctctgaaacgttgttgttttatgtctatgcaaattgtgcaatagcaaatctgattgatatttcaggtctttcaataagaataagctgcagtaagattattaaatgaagataagagtttgctcattcctttcaaaacttagtcagacatgttttcatcataattttataattatccgtAATCCAGTTGTGCAAAAATGAGGGATGTTATAATCTTTACCTCAGTTATGAATCAACACTGGTCAGTATATCGGAAgtaaacagtgcagaaatttcgagtgtcaatttgcctacacgtattaaatgcaacacgaatgtttcagagagtccatAAGAACGCAGACAAACTCTCACTTCCCTTCCGAACTAATCTGACAACAACTTCTTCCGTCTATTGTATTATATAGtgctgcatctgatcgtagcgaccatctgttcagacaacactgaatcccgggtgcattgtttcacatcctgttgttgtgtcaagtaCGCGGCTTCGCGCGAGACAACAGCGCTTCGggagattcgacacatttctgaacttctttgcagcaaagacaatctacggcgttttgcagatggtttaaggcaCAGTTACTACATCTACACAGGTAAGAGTgtgaaagtataacctgcataacaggcgtttatttagccgagcacgattataatatttacaccaggAGATGAGCAATCGTGCCATTTCTTCCCGcgtctcgagcgcttcggtaccatcaCATAGGTTTTCTAGTTTCTGTTTCCTTCGTTCTGCCTCCTCTATCTCTTGATAGAATTAtctaagtcaattttaatcggcaagcggcttgtctgtgttaggaccttctggttctgaatagtctTCCTTCTCGTTCCCAAGTTCTCTTTcgctttaatatttacacctagagatgagaaatcgtcGCATTTCTTGCTATGTCTCCAGCGCTTCGATGccatcaaataggttttctAGCTGTGAATTATTCGTTCTACCTCCTTtttctcttgatagtattctctaagtcagtattcatcggcaagcgccttgtctatgtaaggatcttctggttctgaatagcttctttctcgatctcgaaatctgttttgctttcaacttcagaggttggcgattcgcattctatggactctaaaacctccaaatcactgcccataTTACTTGTAACActagcagtttcacataatttcgtgcttaatttggcagttgcggaataaagaaaaacaaaatgtaatagatctccgcaatgcggcccacgtagcttgttttggcatcgactccgttcctggtatgacgtcacaacgtgactatgcccaggtctccctttgcgcggtttttgacatgaccggaagtaaaatttcacgtttttaaacggcaaaagcgcagggaaggaaaatcgaaatcgaaaaatattttttgatattcatatcaggatgtcatttagattcgatcaggcaaattaaaaaaaatctgtcgTATGCACTTACTCACTATGAGTTCCTAGACATGCTATCTAAGTTGtaatgggaaaaataaaaatcttTGGAAACAATAACAAGATTGCATTTCAGAGATGAAATCCACTATGTCCTCTGAAAAACGATGTCTTATTCTTTCGGCTTTTAAGAAGAAGCACAAGAGAAATGTACATAATGGCTGAATTGTGTCTTCTTGTGGAAATATATCTCCACCATCTTGGACTAAGAAGAAGCGGACGAGTCCTTGTTTCATTTTGGTTCTCTCTATTTGGTTGACTTGAGCTGTGTGTTACCGGTGTCTCAGTCTCCACTCTGCTGTCTTCTTCAGACACAACGCTAACGTTTCCGTTTTCAGCAGTCTCGGCTTGATGGACCGTCCCACTGTCCTCTTCGTTGTTATTCTCTCCACCACCCTGTAATAACAAGAAAAAGTCTAATAGTTCGTGATTTATGACCCGTTTATGGGAAACTGTAAAGTAAACGCGCGCGAAAAAATACCATTCTTCTATGCCAAGCTGGAGTTAGTTGGCTTTAAAGCCGAGTTGGAAAAAAACTCTGCGCGAGGTTCCTCTTTTTAAATCTATTTCAAATTTTCAGGATTCAGATACACTTTTTTTGCGGAGTAGttaagggcctggctaaactaggaacgCTCTATAAAATCCTATAAGGGGATGGATGAACCAAAAGTTTATACCAAACCAGTTGATAGTGTTTTTCGTGCGTTCTGATTACCTACTCAATCTCGGGATATTATCTGCTATTCCCCGCCTGGAATTTTTTTGGATTTCGCACGCGTTTTcgctcatttctcagaaaaaaacgAAACTATTTGGTGCCTCTATAAACTGGCTTGGTACATACTAACACAATTGTTTACCTCAGTgttggtgaagagtggtagGTATTAATCTCGCCACTTtgcggctcggcaaatatccactaCTATTctcctccacttcggtgaataactGTTAATTATTCATTTAGTTCATTCCCTGAAGAATTCAGACCGTGCCTAAAGAAATATCGGAAAATTACAGAAGATATGACCGCAGCTGTACAGTCATCCTTTCTTTGTCTATTTGTTTATCTAAACAAGGAAACAAAgcttccgcaacaatgtttcctagtttagccacgCCCTTAATCTATCAATCTTCACCTGTGTGAAGCTATCCTTTTCTTCTTCACCATCTCTGCTGATGTATTTCTTGTAAAGGAAATAACCAGCACCAGCGACTATGCCCGCGCCAAGACAAGTCAGGATGCTCTCgaattttcccattttttttgttttcagctcGCTTtcggaaaaaaactgaaataacaCCTCTGAATCACCGTACGATCAACTTAGAAGATCGCTAAACGTCACCAATTTAGTTTGTGATGTAGTAGTTATGTCACTAATAACCAATTCCACGCGGGCTCTTTAGTCAGCGGATAGTCGCCTTGGTGTCGGCCCTTTGTTGGTGGATTCACAGCTGGCACATGCGAAAagcacgtcacttccggttttacAGAGCCTTGAAATTTGAAGCAGTCCTAACGTTTACCGGCGTGAAGTTCACCATAAAAACTATAATCTTACGCTAAGACGTTTCGCCTTACCTCAGAACCAGAACAATGGCTGAGCATCTACGTCGGCAATTGTTCTGGTTACCAAGTATTTAAGACTTTCGTTTTAAAAACGGCGCATAAAACGTGCGGATGACAGTTGCTTCATTTTGAATCCATTCTTAAGGTAAAAAGGTTAAGTTTTTCACaaatggcgttaagttttgcggttaaagtgaaacttttcacatttgtctgtatttttctttcaaaaaaagggGGTGGGAACTGCGCACACGCTGTACGTTTGATCGCTGAATGTGCTCCTGCAGTAGTCATCCGCCGACTTCACAACGTCACATTACTGACTGGCTGGTACAAAACGCAGGTCACATTATTCACAGATGACAACAACAGGTCACTGTGCTACCGACATAGAAACAAACCTCAGAGTGTCAGGATAGTAGCTGGTATATATTTTAGCAGCTAAGTCCAGGTGTCCTGTTGTTGTGATCTGTTACATTGTACCTGTTGAAACCTGTGACCTGCACTTTGTACCAGCCACATAATGATTCCTCACGGGCAAAAATCCTAGATTTCGTCATGGGCTGGCCGAGAAAAAGCTGGCGACGAGATTAGGACGTTTGTCGCGTGTTTAAAACAGTCGCGTGTCCTTGCGTGATTTTGCGGCAGGTAGCGTGATCATAATGTGAGCCCACCATATGTCAGCAGGTTTAgttaaaaatccaagatggcagaatACTTTGATGAAGTTGTTCTTGACACAGAAGATTTGGAAAAACTTTTTCAAGCAGCAACAGAATATGTGAGGACTATGAAAAACTTAAGTGACGAAAAGAAACTTACTTTCTACGCTCTTTACAAACAGGCAAAAGAAGGACCATGCAATACGTCCAGACCAGGGTTTTGGGATGTAGTTGGAAGAGCAAAGcgGGACTCATGGAAAAAGCTTGGAGAAATGCCTAAACAGGAGGCCCTGGAGCTTTACATCCAGCAACTTTTTGAAATAGATGCAGAATGGGAATCAAAATATGCAGTTACTGATGACTTGACTGTAAAGGAAAGTGAAAAACCAGTTCACAAGCAGACAATGGGCCTTGCAGTCAGCACTTTGCGAGGTCAAGACAGTCATGAAGGTGACATTGTAAGCGATGCTGATAAGTCAGTGTTCGATTGGTGCAAAGATGGAAATGTCAAGAAAGTGGATGCTTTGCTAACAAGAGGAGAAAGTGTTAATGCTAAAGATGATCAGGGAATGACATTACTTCACTGGGCTTGTGATAGAGGTCATGAGGATGTAGTGAGATACCTTATAAAAAACAAagcagaaataaatgcacagGATGCTGATGGACAAACACCCTTACACTATGCTGCTACATGCGACTTTATGAGAATAGCAGAAGACCTATTACAGTCTGGAGCAGATTGTTCGATCGCCGACAATGATGGTTGTCTACCACTTGATGTCACAGACAGTTCAACAATTAAAGAATTACTAAATAGAAGAAATCAGGAGTCCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00887 all species →	ACBP	Acyl CoA binding protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR035984 all species →	Homologous_superfamily	Acyl-CoA binding protein superfamily	Interproscan
IPR000582 all species →	Domain	Acyl-CoA-binding protein, ACBP	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24119 all species →	ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000062 all species →	Molecular Function	fatty-acyl-CoA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_027654-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.