Gene detail

Detailed information of FUN_027748-T1 in Acropora pulchra

Genomic Location: ptg000021l:9952093...9969645
NR annotation: XP_044165702.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114971804 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_027748-T1

ATGGGAGACTCGATAAAACTGATAAAATGGATGTCTACGTTGGTTGTGGCGAGCTTCATTCAACAAAAACCTGTAAACATACTTGGAGCCGCTATTTGCAGCTCTCCGTGCCTCTTCTTGGCGAACACAACGGATATCATAGCCCTCGACTACAAAACGTCCGCAACACACTCTGTAGTATCTGGACTAACAAGAGCTGTTGCAGTTGATGTCCACTTTAACCTGGGCTATCTATTCTGGAGCGACGTGATTGAACAGAACATCAAACGTTCCTCAACTGACGGATCAGGCATCACAACTATAATAAGTGGTATTGGTGTTTGCGACGGATTGGCAGTCGAATGGAGGACATCACAGTTGTACTGGACTGATACTACACACGACACTATATCAGTGTCAGACTTATCAGGCAGTAATCAACGTAGTTTCCTTTCCTGGGGGCTCGATGAGCCGCGAGACATTGTGTTGGATCCAGATAGCGGGGTAATGTTTTGGACTGATTGGGGTTCGGCTCCAAAAATAGAGAAAGCTACGTTGGCTGGAGGCCAAAGAGTTGCCATAGTAACGACGAATCTTAAATGGCCGAATGGAATGGAGCTTGACAGAGGAAACAAGCGAATTTATTGGGTGGATGGAGGCACTGACAAAGTAGAATCGGTCAATTACCAGGGCAACAACAGGATTTTGCTTTCAAAGGTTAACGGTTATCATCCTTTCGGAGTCGCCATGATATCTCGTTTCCTCTTTGTAACTGATTGGGCGTTAGGAGGCGTACTTCATAAAGTAGACGCTGACAGCGGGCATTTTATTGTCAGTAATTACAAGACGACGGGCAGGTTAATGGGTATCGTGTCGTATGATCAATCAAGGCAAGCTCCAGTTGCAAATCAATGTGCCATAAACAATGGAGACTGCAGCCATTTCTGTGTGGTGACATCATCTAGTCATCTGTGTGTCTGCCCTACTGGTTTTGCACTGAAGCAAGATGGGAGAACGTGTGAAGACAAGGTGAAGAAGTTTTTTCTATTCACTGATGCTGATGACAAGTCCACCAATACAATCTCACTGGACGTTAATTATTTTGCCGCCAAGAGATTGTTCTCCCATCTTGGAAACCAACGCCCCATTGCTCTAGACTTTGACCCTGTTGAAGATCGCGTTTACTGGACAGACGTGGAGCAAGGTCTAATAGTTGGCGCCTTTTCAAATGCAACTGGGTTAAAGATCTTATTTCGCTGCAACATAAACGTACCAGACGGTATAGCTATTGACAAGGTGGGACGAAACATCTATTGGTCAGATACAGGAACCAATCGAATTGAAGTGGCTCGACTAGATGGGACGAAAAGAAAATTGCTGATCAAAGATGGGCTTGATGAACCAAGAGCAATAGTGCTCGATGAGCAAAATGGTACCATGTACTGGACTGACTGGGGATCTAATCCAAAGATCGAGAAAGCCGCAATGGACGGTTCATCCAGGAGGAGTTTTATAACGGGAAACCTTGGCTGGCCAAATGGACTCACCATTGATCGATCTACTAATCGTCTGTACTGGGCAGATGCCAAACTTGACAAGATCGAAGTTTCTGACCTTACGGGAGCTAACAGGCAGTTAGTTGTGTCATCTGCAGCTGACATCCATCCGTTTGGCCTGACACTGTACCAACGTATGCTATACTGGACTGATTGGAATAACCGGAGTATTTCACGGTTGGATTTGAGAAATGGAAACAAGGAGATGGTCATCACAGGCCTGAAAAAGCCAATGGATATCCACTTATATGATTCAACTGTGACAATTTCAGGTTCTCATCCCTGTGCCACCAATCGGGGACTCTGCAGTGATTTGTGCTTGTTGAAGCCGAATGAAGGATACCAGTGCGCATGCCCAACAGGCATTGCTCTCAAGCCTGACGGGAAAACTTGTGACTATGACATATACTACAACAAGAGCTCGGACCATTTCCTGCTTTTTGCCGAAGCGAATACAGGTGAGATTTACAAGATTCCTCTAGATGTAACAGACACTCCGTGCGAACCTCTGGCGATACGAGACAACATATCAAGGCCAGTTGCTGTTGACTACGACTCCGTGGAAGGAAAGGTCTACTGGACTGACGTGACCTTGAAACAAATTGTTAGGTCATTTCCCAATGGCTCTGATCTTGAAGTCTTAGCCACGTATAATGTGACAAATCCTGACGGAATAGCAATTGACTGGATTGGGCGCAATCTTTACTGGACTGATGCCGGTACTAACAGGATTGAGGTATCGCGATTGGACGGGTCCTTTAGAACAAGCCTCATTACAGCAAACGTTGATTCGCCGAGAGCTATAGTTCTTGATATCGATACCAGAAAGATGTATTGGAGCGATTGGGGATCTTCACCAAAGATTGAAAAATCGAATATGGACGGCACAGACAGAACAACGATTATTAGTTCCGGGTTGACGTGGGTGAACTCCCTTGCACTGGATTTAAAGAAAAAGGTACTATATTGGTGCGATGCGAGTCTCAATTTGATTGAAAGAATGGACCTCGAAGAAAACAACCGTGTTGTGGTTCTAAATTTGACATCTGATAAGTATCATCACCCATTTGGGCTGGCGTTGTGCCAGGACATCCTGTTCTGGACAGACTGGAGCACCCAAAGCGTTCATAAGTACAACATGACGTCTGCCACTAGTGAAGTGTTGGTCTACGGGATGGGACGCCCAATGGAAATTCACATGTACGATTACAAGACAATCACTACCGGAACCACTAGCTGCTCACATTTGAATGGAGGGTGTAGCCACATTTGTCTTCCAAACCCAACTGGCCATCGGTGTTTCTGCCCAGAGGGAGTGCGACTGAAGCCTAGTGACCAATTTACATGCCAAGGAGTGAACCGCTGCCCCCAGTTATCTGCTCCTGTCCATGGTAGTGTTGGGCCCTGCTCTAATCTCCCTGGACAAGCCTGTCAGTTTTCATGTGATCAGGGGTATGTGCTGAGTGGAGCGACAAGACGGACATGTAACAATGACGGCGCGTGGACTGGACTGCAAACGCAGTGCAATGCCATCTCCTGCCCTTCACTGGTCACCGCTCCAAACGCCATAACATTGACACCTTGTGCCAGTGTCTACGGAACCAGTTGCTTGTATGGCTGTCAAACTGGATATTCCAGCTCATCTGGAAATGTTACAAGAACATGCTTGTCGTCTGGGCATTGGAGCGGAAATGATATCAACTGCACAGATTCTCAGGCACCATCATTCGGCGTATCATGCCCTAGGAATTTGTTACTATCGTATGCAGAGAAAGAAGCGTTTTCAGCTCTGGTGAACTGGACCAATCCGGTTGCTACTGACAACTCAGGCTTAACACCGAAAGTGAGTTCAAACTTCCAGCCACCTCAGACGTTCAGTCAGGGAAATCACGTCATCACATACACTGCAGTGGACCAATCAGGAAATAAGGCTATTTGCAGATTCACAGTTAAAGTGATAGTGATCCGTTGTACGTCATTGACGGTAACACCTGGAGGTCCACTGCGCATGACAAGTTGTGGAAATCATTATGGTGCAATGTGTAACTTCTCTTGTTCCATTGGTTATCGAATGAATGGCTCATCAACAGTCACGTGCAGCGCAAGCGGAAATCAACCTCCAGGATTCTGGGACAGCCCTCTACCAACATGTCACGCAATTAGGTGTGCCACTCTTCCAACTCCATCTAATGGCCTGAAAACTGGGTGCTCTGATCCTTCATTCGAACTATATGGTACTATTTGCAGTTTCTCCTGTAAAAGTGGCTACAAGCTGACTGGTTCGTCAAGGCGACAGTGCCTGAAAAACGAGAGTTGGAGTGGGATGGATACATTTTGTCAAGGTTAG

Transcript

FUN_027748-T1

CTTTGTTTCTGCGAAATAAGTCAGTTTACAACAGTTTAGTGTATGTTTGTCTGCAAAAGTATTTGGATGGACGTATACCTAGCAGGCAACTGAAAATTTCCAGCAATCATGGGAGACTCGATAAAACTGATAAAATGGATGTCTACGTTGGTTGTGGCGAGCTTCATTCAACAAAAACCTGTAAACATACTTGGAGCCGCTATTTGCAGCTCTCCGTGCCTCTTCTTGGCGAACACAACGGATATCATAGCCCTCGACTACAAAACGTCCGCAACACACTCTGTAGTATCTGGACTAACAAGAGCTGTTGCAGTTGATGTCCACTTTAACCTGGGCTATCTATTCTGGAGCGACGTGATTGAACAGAACATCAAACGTTCCTCAACTGACGGATCAGGCATCACAACTATAATAAGTGGTATTGGTGTTTGCGACGGATTGGCAGTCGAATGGAGGACATCACAGTTGTACTGGACTGATACTACACACGACACTATATCAGTGTCAGACTTATCAGGCAGTAATCAACGTAGTTTCCTTTCCTGGGGGCTCGATGAGCCGCGAGACATTGTGTTGGATCCAGATAGCGGGGTAATGTTTTGGACTGATTGGGGTTCGGCTCCAAAAATAGAGAAAGCTACGTTGGCTGGAGGCCAAAGAGTTGCCATAGTAACGACGAATCTTAAATGGCCGAATGGAATGGAGCTTGACAGAGGAAACAAGCGAATTTATTGGGTGGATGGAGGCACTGACAAAGTAGAATCGGTCAATTACCAGGGCAACAACAGGATTTTGCTTTCAAAGGTTAACGGTTATCATCCTTTCGGAGTCGCCATGATATCTCGTTTCCTCTTTGTAACTGATTGGGCGTTAGGAGGCGTACTTCATAAAGTAGACGCTGACAGCGGGCATTTTATTGTCAGTAATTACAAGACGACGGGCAGGTTAATGGGTATCGTGTCGTATGATCAATCAAGGCAAGCTCCAGTTGCAAATCAATGTGCCATAAACAATGGAGACTGCAGCCATTTCTGTGTGGTGACATCATCTAGTCATCTGTGTGTCTGCCCTACTGGTTTTGCACTGAAGCAAGATGGGAGAACGTGTGAAGACAAGGTGAAGAAGTTTTTTCTATTCACTGATGCTGATGACAAGTCCACCAATACAATCTCACTGGACGTTAATTATTTTGCCGCCAAGAGATTGTTCTCCCATCTTGGAAACCAACGCCCCATTGCTCTAGACTTTGACCCTGTTGAAGATCGCGTTTACTGGACAGACGTGGAGCAAGGTCTAATAGTTGGCGCCTTTTCAAATGCAACTGGGTTAAAGATCTTATTTCGCTGCAACATAAACGTACCAGACGGTATAGCTATTGACAAGGTGGGACGAAACATCTATTGGTCAGATACAGGAACCAATCGAATTGAAGTGGCTCGACTAGATGGGACGAAAAGAAAATTGCTGATCAAAGATGGGCTTGATGAACCAAGAGCAATAGTGCTCGATGAGCAAAATGGTACCATGTACTGGACTGACTGGGGATCTAATCCAAAGATCGAGAAAGCCGCAATGGACGGTTCATCCAGGAGGAGTTTTATAACGGGAAACCTTGGCTGGCCAAATGGACTCACCATTGATCGATCTACTAATCGTCTGTACTGGGCAGATGCCAAACTTGACAAGATCGAAGTTTCTGACCTTACGGGAGCTAACAGGCAGTTAGTTGTGTCATCTGCAGCTGACATCCATCCGTTTGGCCTGACACTGTACCAACGTATGCTATACTGGACTGATTGGAATAACCGGAGTATTTCACGGTTGGATTTGAGAAATGGAAACAAGGAGATGGTCATCACAGGCCTGAAAAAGCCAATGGATATCCACTTATATGATTCAACTGTGACAATTTCAGGTTCTCATCCCTGTGCCACCAATCGGGGACTCTGCAGTGATTTGTGCTTGTTGAAGCCGAATGAAGGATACCAGTGCGCATGCCCAACAGGCATTGCTCTCAAGCCTGACGGGAAAACTTGTGACTATGACATATACTACAACAAGAGCTCGGACCATTTCCTGCTTTTTGCCGAAGCGAATACAGGTGAGATTTACAAGATTCCTCTAGATGTAACAGACACTCCGTGCGAACCTCTGGCGATACGAGACAACATATCAAGGCCAGTTGCTGTTGACTACGACTCCGTGGAAGGAAAGGTCTACTGGACTGACGTGACCTTGAAACAAATTGTTAGGTCATTTCCCAATGGCTCTGATCTTGAAGTCTTAGCCACGTATAATGTGACAAATCCTGACGGAATAGCAATTGACTGGATTGGGCGCAATCTTTACTGGACTGATGCCGGTACTAACAGGATTGAGGTATCGCGATTGGACGGGTCCTTTAGAACAAGCCTCATTACAGCAAACGTTGATTCGCCGAGAGCTATAGTTCTTGATATCGATACCAGAAAGATGTATTGGAGCGATTGGGGATCTTCACCAAAGATTGAAAAATCGAATATGGACGGCACAGACAGAACAACGATTATTAGTTCCGGGTTGACGTGGGTGAACTCCCTTGCACTGGATTTAAAGAAAAAGGTACTATATTGGTGCGATGCGAGTCTCAATTTGATTGAAAGAATGGACCTCGAAGAAAACAACCGTGTTGTGGTTCTAAATTTGACATCTGATAAGTATCATCACCCATTTGGGCTGGCGTTGTGCCAGGACATCCTGTTCTGGACAGACTGGAGCACCCAAAGCGTTCATAAGTACAACATGACGTCTGCCACTAGTGAAGTGTTGGTCTACGGGATGGGACGCCCAATGGAAATTCACATGTACGATTACAAGACAATCACTACCGGAACCACTAGCTGCTCACATTTGAATGGAGGGTGTAGCCACATTTGTCTTCCAAACCCAACTGGCCATCGGTGTTTCTGCCCAGAGGGAGTGCGACTGAAGCCTAGTGACCAATTTACATGCCAAGGAGTGAACCGCTGCCCCCAGTTATCTGCTCCTGTCCATGGTAGTGTTGGGCCCTGCTCTAATCTCCCTGGACAAGCCTGTCAGTTTTCATGTGATCAGGGGTATGTGCTGAGTGGAGCGACAAGACGGACATGTAACAATGACGGCGCGTGGACTGGACTGCAAACGCAGTGCAATGCCATCTCCTGCCCTTCACTGGTCACCGCTCCAAACGCCATAACATTGACACCTTGTGCCAGTGTCTACGGAACCAGTTGCTTGTATGGCTGTCAAACTGGATATTCCAGCTCATCTGGAAATGTTACAAGAACATGCTTGTCGTCTGGGCATTGGAGCGGAAATGATATCAACTGCACAGATTCTCAGGCACCATCATTCGGCGTATCATGCCCTAGGAATTTGTTACTATCGTATGCAGAGAAAGAAGCGTTTTCAGCTCTGGTGAACTGGACCAATCCGGTTGCTACTGACAACTCAGGCTTAACACCGAAAGTGAGTTCAAACTTCCAGCCACCTCAGACGTTCAGTCAGGGAAATCACGTCATCACATACACTGCAGTGGACCAATCAGGAAATAAGGCTATTTGCAGATTCACAGTTAAAGTGATAGTGATCCGTTGTACGTCATTGACGGTAACACCTGGAGGTCCACTGCGCATGACAAGTTGTGGAAATCATTATGGTGCAATGTGTAACTTCTCTTGTTCCATTGGTTATCGAATGAATGGCTCATCAACAGTCACGTGCAGCGCAAGCGGAAATCAACCTCCAGGATTCTGGGACAGCCCTCTACCAACATGTCACGCAATTAGGTGTGCCACTCTTCCAACTCCATCTAATGGCCTGAAAACTGGGTGCTCTGATCCTTCATTCGAACTATATGGTACTATTTGCAGTTTCTCCTGTAAAAGTGGCTACAAGCTGACTGGTTCGTCAAGGCGACAGTGCCTGAAAAACGAGAGTTGGAGTGGGATGGATACATTTTGTCAAGGTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88572	Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1
O75581	Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens OX=9606 GN=LRP6 PE=1 SV=2
Q91VN0	Low-density lipoprotein receptor-related protein 5 OS=Mus musculus OX=10090 GN=Lrp5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000594 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF02494 all species →	HYR	HYR domain	Domain	Interproscan
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR050778 all species →	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR003410 all species →	Domain	HYR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513 all species →	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for FUN_027748-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_027748-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.