Gene detail

Detailed information of FUN_027760-T1 in Siderastrea siderea

Genomic Location: contig_27:7528919...7558947
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_027760-T1

ATGAGAAACGGGGGTATCTATATTTTGTTGCTTATATCAAGCTGTGGCTTCAATAATGGAGAGGAAACAAACTTCAAACTTTGCAAGGGAAAGGACAACATTATTAAGAAAGCAGGACCTTTGGTTTTGAAAATCACTAAAGAAAAATGCCAAGGCTGCAAATCTCTGGAAAATTGCACAACGTACGAGGGCAGCATTCAGATACAAATCGTGAGGCAGGCAAGTGAACATGTTATGAATCAACTACGCTTTCCCAAGCTCACAGAAATAACTGGTCATTTGCTGGTCTCCTTAGTTTACGGCCAGCGCAGCTTAAAAGATATTTTCCCTAATCTTGCGGTGATTCGGGGTCGCGAGGTTTTTCTTGACTATTCTCTGGTTATTTACGAGAATGATGGACTAAGGGAAATTAATCTTCCATCGCTGACTACTATTCTTGATGGAGGCGTGCGAATCGAGAAAAACATCAATCTTTGCTATGTAAAGACGTTAAGGTGGGAGTCAATCATGAGGAGTAACGCAGAAGATGAGTACTCCGTGGTTTTGAGGTCTAATAATAATGACTGCTATGATGCCTGCTATCAAGCTCCTGGCGGACAGAAAAAGTGCATCCCGCCGGCTGGTCACGGCAGTTTGAGAATTCAACGTTGTTGGGCACCGGGAAATTCACGAAACCCCGAGTGTCAGTCGTTGTGTGATAAACTGAAGTGTGGTGAGCAGGGCTGTTTGAAGGGACGTAGTGACCTCTGCTGCCACAAGGAGTGCCTCGGAGGATGTTTCAGTTTGAACTCTCCCCGACACTGCTATGCCTGCAGGCATCTCCGCCAAATGCCAAGTGGTGAATGTGTTGAAAAGTGCCAGTCGCACCTGTTTGAGATTGATAATTTTAAATGTGAGGCAACCTGCCCCAGTAATTATTACAAGCTTGAAATTCCTGGTGAAAGTAAAAAGTGTGTTAAGGTGTGCCCAGCAGGGTATCAGAAGGAGGGTCAGAGTGACTCCCTATTCGGTTCACCTCCCGAACTAAAGTGTGTCAAGTGCAAAGCAGTCAAATGTCCAAGAGTGTGTACCACTGCTAATCCTTCCACACCTGACAGTGATGAGAAGCCACCAATTGAGTCACTTGCATCCTTGGCTCTCTATGAAGGCTGCACTGAAATCAAAGGAAACTTAATTATTAACATCAAAGGAAGTGGTGGATCAGgtgttGCAACAAAGCTCGAGGAGAATTTGGGAAAAATTGAGAAAGTCAGTGGTTACATTGTGATTCGAGAGTCTACATCTCTAACATCTTTGAACTTTCTTAAGAATCTGAAGGAAATTGAGCCAAGGGGGAAACCAATTCTGAAACCCCCCTTTGGGTTTAAACCTGATTTATACAATGACAGGTATGCACTGGCTATCCTTGATAACCCCAAACTGGAAGCTATGTGGCCATTTCAGCAGAATCTAAGCATCAGTGATGGTGGAATAATGGTGCATTTGAACCCATACTTGTGTCCAAGCAAGATCAATCCTCTAGTGGATGATATTCTTAAGTGGAATAGGAGTGACACCAGCAGAAAGATTGATATCTCAGACACCACTAATGGGAATGCTGTGGCATGTAATGTTCGTACAATAAATGTGACTTTAGAAGAAATAGATAGGCCACCAGGAAGAATACGGTGTAACCCAGTTTGCATGAAAGTGGAATGGGACGAGGTTGTCATTAGTGATGACTACAGGAACGTCTTGTTTTATACTGTGTCCTATAGAGAAGCCCCCAATAGGAAAATCACAGAGTATGATGACCGTGATGCTTGTAGCAAGGAAAGCAATTATGTGTGGACTCGGGTGGACCATGTGGTGGAAACTCCTGAGGTAAATGTCAGTTTAAGCAGCTTTTCAGCCAAGCCACGCAAGCTTGTGAAGTACATCCAAAAACTCAAGCCCTTTACCCTCTATGCATTTCAAGTGGAGGCCGTTGTTCTAAAGAACGAGGGAGCCAAAAGTGATCTGGTTTTCATAGAGACTAAGGAGAATGTGCCTTCCGTGCCTGTTGGTCTTGAGGCAAACTACATCAGTTCATCAGCATTGCTTGTCAAGTGGCAGCCTCCCTTATTTCCTAATGGTAATATCACCAAGTATATTGTGAAGTACGACTTGAGTGCTTACTCGCCATGGGAACAAGATTTAGACTGGTGCAATCGGCAGGTTTTTGTTAGCAGACGTGAGGACAAGGATAACACAGATAAGGGAAATGGTGACAAAAATCCTGATGGAAGCTGTAGAAACATAACCTGTGACTGTGACAAGGACAAGAAGGAAGAAGAAAAGCCAGAAAAACTTGCAGCGCTATTTGCAAAAGAGTTTCAGGACAAGTTATACAGGACAATCTTCACGAAGGATAATGATGACAAGGAACCTCCAACAAACAAATCCATTTTACCAACTACCACCCCCACTGCATACTATAATCAGAGCAACTGCAGCAATAATGCACAGAACCCATTGTGTCGGTTGTCCACCATGTCTGCAAGTGGTAAAACTACAACCTCTTCTAATGGGTCGACCACCACAGCCAAAACGACCTCTGCAAAGCCTACAGTCACAGTTCCTACAGCCAAACCTTTCTCCAATGTCACGTTAGTTGTGAAGGGCACAGAGAATAGTGTGACTTTGAGAAAGTTGAAACACTTTACAGACTATAAAATTACAGTTTGTGCGTGTACAAAAGTTGGTTGTGCCACTGGAACGTCCTGTGCTGTCAGAAAGGGGATGACAAACAAGAAAAATTATGCTGATAATCTTGGGGGACCTCTCAAAGTGACCGCGGACAACTTCACAAgagaaTTTTATCTGAGGTGGGATCCTCCGAAGGACCCCAATGGTGTGGTACTGAAATATGACGTGGAAATAAGACAGGATGACAATCCTGCTCTGATACACTGCAGACGTGGAAATGAGAATTACTACAGAGACCGCGTGCCGCTTAATGCTTATGGTAACTATTCTGCTCGTGTGCGAGCCATCACTCCTGCGGGAAACGGCTCTTGGAGTCGCGCAGTGTTCTTCTCCATGAAATTGAAAAATGGGGAACCTACAAATCCCCCCGTTGTGGAGACAGATGCTTTTCCCCTCGGAACAGTCGTGGGCTCCAGCATTGCTGCCAGTGTGGTGTTTGTGTTGGCCTGTGGTTTTTTTGTCTGGTACATTGCTCGTAAGAGATACAAGAGGTACAGTGATGAACAGATTCCTGGGGTATTGTACGCTTCAGTTAACCCAGAGTACATGACTTCCACTGACGTATATATTCCTGACGAGTGGGAATTTCCACGAGAGAAGATCAAGCTGGTTCGTGAACTCGGGAATGGTTCATTCGGAATGGTGTACGAGGGAGAGGCCGAAGACATTACTCCAAATGTCCCTTGCTGTAGAGTGGCAGTCAAGACTGTAAGTGAAAACGCGTCAATTCGAGACAGAGTGGAGTTTCTTCAAGAGGCCTCTGTTATGAAAGAGTTCTCCAGTAACCATGTGGTGCGGTTATTGGGCGTGGTCTCTGAAGGGCAACCTACTCTTGTTATTATGGAGCTGATGGAGCATGGCGATCTCAAGAACTTCTTACGATCACGCCGACCAGGGGAAGGATCTCTGCCTGCTCCAACTCTTCAGGAACTTCTTCAGATGGCTGGAGAAATTGCCGATGGAATGGCATACCTTGCGGCCAGAAAATATGTTCATAGGGATCTTGCAGCGCGAAATTGTATGGTAAACGCAGATTTTACAGTTAAAATAGGAGATTTTGGAATGACTCGTGATATTTACGAAACAGACTATTACAGAAAAGGAGGAAAAGGTTTGCTTCCTGTGCGATGGATGGCACCTGAGTCATTAAAAGATGGCGTTTTCACAAGCAACAGCGATGTTTGGTCATTTGGTGTGGTAGTGTGGGAGATGGCTACACTGGCCTGCCAACCCTACCCTGGAAAGTCAAACGAAGAAGTTCTTAAATATGTGGTTGATGGCGGGCTGATGGAGAAACCAGAGGAATGTCCCGACAGGCTGTATGAAATGATGGCACTTTGCTGGCAGTATAGCGCCAAAGCTCGTCCAACCTTTGTGTACCTGATAAGCCTACTGGAGGCCGACTTATCCGACACTTTCCGTGAGCGTTCATTTTACCACACTCTTTCAGAAGACCAACTAAAAGGACTGTTAACCAGCCACTACAAGCATAAAAATAGATTGGAAACTGCGGACTCTTCTCTGAACGTCGAATCCGCAGCTTAA

Transcript

FUN_027760-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF01030 all species →	Recep_L_domain	Receptor L domain	Repeat	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR036941 all species →	Homologous_superfamily	Receptor L-domain superfamily	Interproscan
IPR006212 all species →	Repeat	Furin-like repeat	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR002011 all species →	Conserved_site	Tyrosine-protein kinase, receptor class II, conserved site	Interproscan
IPR050122 all species →	Family	Receptor Tyrosine Kinase	Interproscan
IPR000494 all species →	Domain	Receptor L-domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24416 all species →	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0004714 all species →	Molecular Function	transmembrane receptor protein tyrosine kinase activity	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0033674 all species →	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_027760-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_027760-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples

28TPM > 0

7Conditions

110.5Max TPM

17.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
holobiont · low.pH_high.temp	20	4	10.49	78.35
holobiont · low.pH Control.temp	20	5	16.30	105.75
holobiont · control.pH_high.temp	20	7	14.60	74.15
holobiont · control.pH Control.temp	19	6	19.21	110.51
Whole organism	4	4	59.03	73.14
unannotated	1	1	33.20	33.20
live coral tissue/skeleton	1	1	60.67	60.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR22214406	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	78.35
SRR22214423	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	57.35
SRR22214402	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	38.43
SRR22214415	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	35.62
SRR22214403	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214404	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214405	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214407	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214408	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214409	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214410	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214412	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214413	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214414	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214416	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214417	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214418	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214419	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214420	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214421	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214428	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	105.75
SRR22214445	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	91.04
SRR22214443	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	61.39
SRR22214437	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	50.51
SRR22214424	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	17.32
SRR22214425	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214426	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214427	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214429	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214430	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214431	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214432	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214434	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214435	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214436	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214438	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214439	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214440	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214441	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214442	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214450	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	74.15
SRR22214461	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	59.83
SRR22214467	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	48.93
SRR22214459	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	46.94
SRR22214446	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	29.16
SRR22214462	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	16.59
SRR22214463	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	16.30
SRR22214447	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214448	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214449	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214451	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214452	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214453	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214454	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214456	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214457	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214458	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214460	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214464	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214465	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214548	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	110.51
SRR22214468	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	79.80
SRR22214471	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	75.85
SRR22214411	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	53.49
SRR22214535	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	30.34
SRR22214400	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	14.94
SRR22214422	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214433	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214444	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214455	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214466	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214469	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214470	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214481	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214492	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214506	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214524	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214546	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214547	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR14295601	Whole organism	Whole organism	not recorded	not recorded	SRP315757	73.14
SRR14295600	Whole organism	Whole organism	not recorded	not recorded	SRP315757	61.06
SRR14295603	Whole organism	Whole organism	not recorded	not recorded	SRP315757	51.59
SRR14295604	Whole organism	Whole organism	not recorded	not recorded	SRP315757	50.33
ERR12861049	unannotated	not recorded	not recorded	not recorded	ERP159209	33.20
SRR12454619	live coral tissue/skeleton	live coral tissue/skeleton	not recorded	not recorded	SRP277390	60.67

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.