Gene detail

Detailed information of FUN_027768-T1 in Siderastrea siderea

Genomic Location: contig_27:7636691...7699044
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_027768-T1

ATGGCTGCCGAGGTCACAGAAGACCATATTCTGTACGATGTTTTTATTCGCGCAGAGTGGATCCTCGAGGGAGAAATTTTGAACAAGACAGGATTTGACATTGGCCAACTGAGAGGATCTCTACCAAAGAAGTTCTTGACAGTTGCACAAAATTCATTTTGGTGGTTACTGAGAGGAGTCCAGTATGCTGTTGGTGGCAGAAATCAGATCCTTGGTCTCCCAGCACAACTTTATAAACTCATCAACAGCTCACTAAGCTGGCAGTTTGCTTTATCCAGTGATGGGAAGCTTCTTGCAGTACTTCAAGATGGTTTTATTGAAATAAGATCATTTGTAGATGACTTTGAATCTGTGGTTGCCAAGTGCAGCATTAATAAAGACAACTGTCCCCAATGGAGGAAGCTTGCATGGAGTCAGGATTGTTCAATGTTGGCCTGTTCTTATAGCTGCGGAGACATAGCAGTGTTTGACCTTGCAGGGGAGTTACTCTTCACAATTCCTCAGACTGTGGGGACTCTTCCTTCAGATTTAAGTGACTGCATATCTGGAATTGTTTTTATTGAGCACAAACAGAGCTCACAATGGTCTGCCGAACTGATAGTCGTAAATTATCGTGGTGTCCTAAAGAATTATTTGGTCAGCCCCACAAATGGCTTCCAAGAGAATCATACTTTCTCCTTTTACAATGTCCTGCCTCATGTAGTTTGCTCAGTTGTGTACCATCCTCAGCATAAACTGTTGATCCTTGGCAGTGTTGTTGGACAGGGTCACAAAAGTACTGCAGAGTCTTGCGCAGCATCAGAGTGTGGGTTAACAGCATGGAGGATTCTTTCAGGATATCCTTATTATAACCTCATTGAAGATGAAGCCACCAATTTATTCAAGGGTGGTTCTGGAATTTTAAAAAGACTTCACAGTCTTCCACTACTGAAGTCAGCAGCTGAAGGGCAGGAAGGTGTGGTGTACATGTCCCTGTCCCCAGACAGCACTAAGCTGGCAGCACTACATTTGTCAGGGACCTTGTCCTTGTGGCAAGTACCATCACTTCGCCAGCAGTGTATGTGGTCCATAGATGACCAGCCTCCAGTTAAAGATCAGAGAGAACGTCCTGGATTTTCGTCTTTGAAGCCTTCAGATTCTAACAAAGaGTTGTCCTTTTATGGTTTAATGGATGTCAACTGGTGGACTGAAGAGGCATTAGTTTTGGCTCACAGCATTGGGGCTTTAACTGTGTCTTCCATAGAACAAAATCTTCGTAACTTGCTTGGACATCGTCCAGAAATGTGTGAACCATGGTCTTGCATTACTGCTGCTCATGACAAAGGATTCCTTATCTTGGAGTGTGAAAATGAAATCAGGAGCTTGCAATCCAAGCTTGCTCTCAGTAATGATGATGCCAATGATGATGAGAATGAAGAGAAGGAGGATGGCGACTTGGAGagtgatgatgataatgatgaacCAACTTTGATGTCTCGATCAAAACAATTTGCTAAACAGGTCATGTTTTTCCTGACTGAAAGTGAAAGGTTTCAGCCACCTGTAAAGATACGCAAAGCTCTTCATCGTACTTATCGACTGGTTTGCTTAAGATCCACAACACCTGAGGAACTCTATGCTAGGAAGATTGAACATGAGGAGTATGGTGAGGCTCTAGTCCTTGCACAGACGTACGGACTGGACAGTGACTTGGTTTATCAGAAACAGTGGAGAAAATCCCATGTGTCAGTTGCCTCAATCCACGACTACTTGAGTAAAGTCAAGAATCGCTTGTGGGTTCTAAATGAGTGCGTGGAAAGAGTACCAGAGAACTATGAAGCAGCAAAACAGCTGCTGTGTTATGGGCTCCATGGCACTGATGTTAAGGTGGTGTCAGCTGTGGGTCATGAGAAAGGTCCCTTGCCATTTATTATCAAGTCTAAAGGTGATGATTTTGAAGATGATgaggaaagaaagaagaaaataaaagagcTTGAGGAGTCTTTAGAGTTTTCCAGTTTCAACCTGGAGCAGCGTGACATTTGCATGTACCGGCTGAAGCTGCTGCAGTACCTTGATCGTCTCTCCACCTATGAGGTTATTCTAGGAGGAGTCCATATGGCTCATGAGGACTACTGCCACATGTTCTTTGAACGGTTTAGAGAAATGAACATCATGCAAGCTGCTGTGGAGTATGCCAGGGATGGAAACTGTGAAGCCCTGGAAGCAATCTTCACATACCACAGTCAAGATACCGTTCCTCACAGGCTTGCTATTCTTTCAAACATTGATGAGACTTTACCTCCATCTGAGTATCAACCTCTTTTACCAGAGGCAGGTTTCTTGTCAGATGACCCAgatgttttggaatgggaagtTAAGTCTTGGAGAGATGCTGACTGGGTGGAGAAGGCAGAGTGCAAAAAGGTTGTAGGCTGGGATGAAAGTGGAGATCCAGCAGAATTTATTTACCAAGACAACCCTGATTTACAACAGTACAGGTGCAACCTAACGTCTGAAACTGTGACCAAGTGGTACAGGAACAGAGCCTGTGAGATGGAATCTCTCTCCAAACAGGTAGGAAATTCACTGGAACTCATAAAGCTTGGAATGGAAAGAGGAATCAAGGGGCTGGAAGATCTTTATGATGACCTTATTACACTAGAAGTATTGGTGTATGAGAGTTGTGCAGATGTAGGTCTTAGTCTACAGTCTTTTCAGAGCATGTCAGAGCTGGATAAACTAAGGATGCTTCTTAAAAAGTCCACAGAAGATTCATTTATTGCTGATTTCAAATGCTGGGTCTTTCCATTTTTGCAACGTCTTGGAAAGCAGAAGAAGAAATCTCAAGTGAACCTTATCTATCAGTATTTAACTGATGTGGCCAAGACTGACCTAACATATGTGTTGAAAGTGTTTCAGAACTCTACACCCGAGGTCAAGGAACCTATCATAGCAGATGCTGCACAACTTATGAAGCTTGCTTTGGATTGTATTTATATCACCAAGAGGTCTGATCAGTTGGACTTGGCATTCAGCATACTGGAGTGTCTGCCAGCCAGTGATGAGGATGTGCTATCAGATCAGATTAGTGAACTGAACAAAAAAGTGGATCAGTTAGAAGTTTATTTGTGTGCCTGTGAGACCCTAACCAAACATGGTCTTGAAAAACCGGTGTCCTTTGTTCTGGAGACATATGGTAATTTGGAAGAAGCCAGAGCTCTTATGGTAGCACTGACAAAAGCTGCTGCAAAAAGGAGTTCCCCTTTAAAAGAGAGTGATTGGAGTGTCCTTCTCGGTGACATGTTGACTTTGCAAAGAGAAGTGTATACCTGCATTGACCCATCTGTGTGTTATGAGATTTACACAGAAACACTTCTTCATTGTGGTAGGAGAGAGTGCATCCACTTGGCTGGCCAGATGATCTGCAAGGCAGCCATGGAAGACGATTACCCACTACCCACTAGTCCTGTTTCTGGTCCTCGTATTAAGTGTTCCAGGGCCACAGAGCTTGTTTTAGAAGCTGCTAAAGAGTACTTCAACTCCTCTGCTGATTTGTCTGATAAGGTCATGGACTTGGCTAGAGAATGTTTAAATCTTATTGAGGATAGATCTCCTGCGCTACAGGAAGAGTTTAACTTTATTGCTGCCTTGGCATTGCTGGATGATTTTGGCATCTCAATTCTTCCCTTACAAGTACGTTTGTGTGAAGACAAACTTAGTTTGATCAGGCAAGTGCTGGAATCAACTTCCACATCttacaagaagaaacaaaagATCCTTCACCTTGCCAGCCTTCTGCAGATCTCAGGCACTGATGAAAAAACAAGGCATGGCAGTGTGCTAATGCTTGTGGCTGAGTCTGCTATACAGGTGTTAGACTATGTATTTGCCTATGAAACCTGCCAGGAACTGATACTGGAGGAATACATTCCTGTATGGACTATCTGCAGGACTCTTGGAGAATGTGAAGAGTTTAAAGACTTGAAGGCAAGGGAAAGTCTTCTTGCATTTTCACTGACTCACTGCACTCCAGATGAGTTGGAGTCTCTTCTTAAAGCTAGAAGTCTCCTAGAAACTAAGAGTTTGTATCAGGAGTTAAATCAACACATGCAAGCAGCAGATCAGgaAAATGAAGATTTGTCTTCAGACCAGGGACTTTTAGCACATCCTAAGTCCTTGCTGTCAGCTGTAGGCGACAAGAAATTCTGGAAGAGCACAATGAAGTGGATCAGGCCCTTACATGATGAACAGACAAGTGTGGCAGACAGCGAGCTGATCACTCCAAGCTCACAAATTATTAATATACATGGATTTCACCCTTTCTACCAGTCATTGGTGGAAAAAGATTTTACAAGATCAAAAGGGgATAGACTGCCATATGAgcatcacattgctgagcagaTGGCTAACAAGCCACTGTTGTTTAGTCGCTGTTTGTTAAGGACACAAAAGTTGTCTGAGAGCAGGTCTGAAGGAGAGATAACTGAGCCAACCAGTGAAGTGATGGTTCAGTTAGCAGAGTCAGTGCTGAAAAAAGACACCACACTGGGGATTGCGTATCTTCTTTCACTTTGTGAGGCAAAGCAAGTTGATgaatttttcagcaattttggCAGTAGTTACTTGTGTCTTGACATGGCAGCATATTGCTTTGCAGTCAATGCCTACAACATCCTCCAACCTTCACTGATGACTCAACAGGCAGATGTCTATCACTACTCACCTTCAGATTTAATTGATCATGTAATGGATCATGTTGCTGCTGGTGTGCACAGTAACTGGCCAAAAGAATCTCAGAACTTTGTTAACTACCTAGTTCAATATCACAACCGTATGGCTGACTTTGCACAAGGACAACTGCTTCAGAGCCTAGGAAAGGGTATGTAA

Transcript

FUN_027768-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15492 all species →	Nbas_N	Neuroblastoma-amplified sequence, N terminal	Repeat	Interproscan
PF08314 all species →	Sec39	Secretory pathway protein Sec39	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029145 all species →	Domain	Neuroblastoma-amplified sequence, N-terminal	Interproscan
IPR013244 all species →	Domain	Sec39 domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15922 all species →	NEUROBLASTOMA-AMPLIFIED SEQUENCE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0070939 all species →	Cellular Component	Dsl1/NZR complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20473	NBAS; neuroblastoma-amplified sequence	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.