Detailed information of FUN_027775-T1 in Siderastrea siderea

Genomic Location: contig_27:7739136...7773175
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15292
all species →
Treslin_NTreslin N-terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026153
all species →
FamilyTreslinInterproscan
IPR032746
all species →
DomainTreslin, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21556
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003682
all species →
Molecular Functionchromatin bindingInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0006260
all species →
Biological ProcessDNA replicationInterproscan
GO:0007095
all species →
Biological Processmitotic G2 DNA damage checkpoint signalingInterproscan
GO:0010212
all species →
Biological Processresponse to ionizing radiationInterproscan
GO:0030174
all species →
Biological Processregulation of DNA-templated DNA replication initiationInterproscan
GO:0033314
all species →
Biological Processmitotic DNA replication checkpoint signalingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K26117TICRR; Treslin-DNA replication proteinsko03032deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_027775-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
26TPM > 0
7Conditions
20.4Max TPM
2.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 5 2.21 20.37
holobiont · low.pH Control.temp 20 4 1.81 14.18
holobiont · control.pH_high.temp 20 5 2.20 16.71
holobiont · control.pH Control.temp 19 6 2.82 18.76
Whole organism 4 4 4.03 5.73
unannotated 1 1 4.58 4.58
live coral tissue/skeleton 1 1 3.98 3.98

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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