Detailed information of FUN_027778-T1 in Acropora pulchra

Genomic Location: ptg000021l:10645605...10673120
NR annotation: XP_044165692.1, LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 4-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O75581Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens OX=9606 GN=LRP6 PE=1 SV=2
O88572Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1
Q91VN0Low-density lipoprotein receptor-related protein 5 OS=Mus musculus OX=10090 GN=Lrp5 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000594 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00084
all species →		SushiSushi repeat (SCR repeat)DomainInterproscan
PF14670
all species →		FXa_inhibitionCoagulation Factor Xa inhibitory siteDomainInterproscan
PF00058
all species →		Ldl_recept_bLow-density lipoprotein receptor repeat class BRepeatInterproscan
PF07699
all species →		Ephrin_rec_likeTyrosine-protein kinase ephrin type A/B receptor-like DomainInterproscan
PF02494
all species →		HYRHYR domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000033
all species →		RepeatLDLR class B repeatInterproscan
IPR000436
all species →		DomainSushi/SCR/CCP domainInterproscan
IPR050778
all species →		FamilyCueball/EGF/LRP/NidogenInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR003410
all species →		DomainHYR domainInterproscan
IPR011042
all species →		Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR011641
all species →		DomainTyrosine-protein kinase ephrin type A/B receptor-likeInterproscan
IPR035976
all species →		Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46513
all species →		VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_027778-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_027778-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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