Gene detail

Detailed information of FUN_027831-T1 in Acropora pulchra

Genomic Location: ptg000021l:11386996...11416188
NR annotation: XP_029207737.2, tetratricopeptide repeat protein 12-like isoform X2 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_027831-T1

ATGGAGGAAACTTCAGACAAAGAGGAAGAGTTTAAGAAATTTCTTGGAAAAGTTGATGAAATCGATGCCATCATGAAAGATCTGACATGCGATGACTTGGAGAGGCAAAATAAAGCTCAAAGTGCAGCTGATGAGTTTTTAAAACGACATAGAACTGAGAATGCCCTTGACTCAGATGAAGATGGTGGACAATTCAAAACCAACTTTAATAGGACAGTGATCTCTAAAGGCAGAAAAGAAGGAAAACTGCATCCTTCATCTTCTACTCTTGATCAAATAGAAAGAAGACTTCGAGAGGCTGGAGAAGTTTGTGCAGAGCAGTGTATGAGAGCACTAGATGAAGACAGCAAGGAAAAAGCTAAAATAAAGAAAAGACAGGAAGTTGAAGCTGAGAAGTTGAAAGGGAAAGGCAATGATGCCTTCAACAAGGGACAGTATACAGAAGCTATTGGCCATTACAACATGGCCATAACTAAAATCAGCTCTAATCCTGTTCTCTACACCAACCGAGCTCAGGCACATATCAAACTGAAAGACTTTAATTCTGCTATAGAAGATTGCAACCAGGCGATAAAGATTGATCCTAAATGTGTTAAAGCTTTTGTTCACAAAGCAAAGGCCTTGCAAGCTCAGGGAAAATTTGATGAGGCTATCACAGTCTTGAAGAGTCCAATTGAAGTTGCGCCAAAACAAGAGAAGATTTTGAAAGGTTACATTGCAGAAGCTGAATCAGCCAAACAAAGACTTCAAGAGGAAAAAGAGGCCAACAGCATGGCTGGGCATGAATGCGGAGAGTTAATAAAACAATCTATTAGCCGGCTTCAAAAGTCTAGCCTGGCTACATCGCAGTATCTTGATGCTACAAGAAGATTGTTAGTTCTTTTGGATAATAACACAAACAAGACCATTTTCAGATGTTATGGGGGTTTCCAGATTATAGAATTGAACAAAAAAATTCGAGGATATTGGGAAGGTACACATGCTTGTATCATGATAGAAGATATTGACCTTGTCTGTGAAATAATTCGGATATTGATGGAAGCTTGCACTGACAATGATTACAATGTTGACGAGTTCTTGAAAAAGGACCACACACCATGCTTCAATCATTTGTTACGGGATCCTACATCTCCAGTCATTAGGACTTCTGTAGCATCATTGCTTCATCAGCTCTCCCAAACAGAGAAAGGCCGGCTTGGACTCACTGCATGTAAAGATGTCAAGTGGGTAACAGAAGCACTTTTCTTACTTGTACAGAGAGGGACAAACACTGCTGTTGTAGCCATGTCAACCATCAACAACTTGGCTTTGGAGCAAGGATTTTGTGAAAAAATCAGAGATCTGGTGGACAAAGATTTCTTAAGCATTTCTCAGAAATTTGTGCTGAGGCTATGTGAAGAAAACTCAACTGCTTCTCGGGAGCCAACAGACAACTGGTCCCTTGTTTCATCTGGTTTATCTGCCTTGGCAAACATGGCAAGAGACACTTACATCAGGAACAGAATTGCCGACGATCAGCAGTGGTGGGAGACTGCCATTAAATTCCTGGATTGTCACAGTGGTCAGATAGAGTCTGAGCAAAAGGTCCGATCCTCCATCTTTTCACTTCTGGCGCTGCTGGCAAACATTTCCTCCCAACCAAGCCAAGGGCTGAAGGATGCAGGACCAAAGTTAGTAGCACCACTAATTGGTTTGCTGAATGTAGGATATGATGAAATTTGTGAGCGTAGTCTTGCATCCTTGAGACACCTGCTGAATCATTCAACAGAGGCCTTGAATCAAGCTTGCGACCAGAAAATCTTCATTCATGTAATGCAAATCCTCAAGGTAGCTGTCGCAAGCACTCACTTTCCGGTGTGCTGGGGCGCTAGCACCAGAGAAACAGTGAAGAGGTATTCCATCAAGATCCTTACTTTGTGTACCATGGAGAGGAAAGAAGCAAGAGAAGCAGTCATCAAAGAGAAAGTTCTGGATTTTCTGGCCTTGCTGCTTCACTCTGAAGATGAGATCATCATTGGAAATACAGCCCTCTGTATTAGTCACTGCGCTGATTTGAAGGAGGTTACAAATCATCTTGCTGAAGTCAATGGTGTGGTGGAAATTCTGCTCAAACATGCTACCAATGACAAGTTAAGCAATGATGTGAAACAGAATGCTGCCATCTGTCTGGCTAAGCTGGCAACATCAGATGAAAGACACCTGGAAAAGCTCAGGGAAATGCATGGAATTGAAATTTTACACTCAGTCATAAAGGAATCAAGCTGA

Transcript

FUN_027831-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H892	Tetratricopeptide repeat protein 12 OS=Homo sapiens OX=9606 GN=TTC12 PE=1 SV=2
Q8BW49	Tetratricopeptide repeat protein 12 OS=Mus musculus OX=10090 GN=Ttc12 PE=1 SV=1
Q95LY5	Tetratricopeptide repeat protein 12 (Fragment) OS=Macaca fascicularis OX=9541 GN=TTC12 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004169 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12895 all species →	ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR043195 all species →	Family	Tetratricopeptide repeat protein 12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46540 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007288 all species →	Biological Process	sperm axoneme assembly	Interproscan
GO:0070286 all species →	Biological Process	axonemal dynein complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24652	TTC12; tetratricopeptide repeat protein 12	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.