Gene detail

Detailed information of FUN_027832-T1 in Colpophyllia natans

Genomic Location: contig_65:2092038...2094478
NR annotation: KAJ7390938.1, Myosin regulatory light polypeptide 9 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_027832-T1

GTCGAATGCAATGGATTTGAAGCAAGTCAATATGTATCACACAGACGGTAGTAAAATTCTCCCACGGCGAAAGTCTAGAAGAGCAGGTTTGAGGCCTCACACCACAGTGCACATTAACAAAGAGCAACTGAAGCAGCTAAAGGAAGCATTCGATTTTATTGATCAAGATCATGATGGTGTGATAAGCAAGGAGGATCTGCAGACAATTTTGATCTCTCTTGGACAGAAACCAACCGATAAACAGGTGAAAGATATGCTCAACGAGGTAGCAGGGAGTGTGGATTTTGCCAGGTTCCTGTCTATGTTTTCTTCTAAGATGGAAACAGCTGATCCCGAAGAATTGATTAGAAATGCCTTCGCGTGTTTTGATGAAGATTGCGATGGTTATATAAATCTGGATGAATTCAAAGAATTGTTGATGACGATGGGGCTCAGGCTTACAGAGCAACAGGTAGATGAAGTATTTCTTCATGGAACAATGACTGATGACGATGGGCAATTTAAATGCGAAGACTTTGTGCGACTGTTAAAATACGGAGAAAGAATTAACGACAAGTAAAATCCTCAGCCAGACAAATGAAGCAGTTCTCTTACAACCAAATTGCAATGATTCGAAATAGATAGTTACCTTTTAGTTTGTGACTTATATGCATCTAGTAAATAGTAACCACCacaacaatgataataataatgaaattaataatattactattactactactactaataataataataacaataatcgtgagaagttgtggttaacactgctaaatagtgctcaatacacatttgtgtagagcggtgtatagaattgggttactaacccaattctaataataacaataataatattagtaaTAAGAGACAAAACCTCGAAGTACGCACCGCTCAGATGGTAGATGCACAGCACAACATCATCATGGATGTGCTCGGGGGCGTATCAAGAGAAACATTACACGACTCGTAGGTGTCAGGGCAGATAATTAAGATCCTACTGGATATGCAAAAGGCAGTCATCGCAAGTACCCTTAATATTGCACGGAGTTTCAAAGTTCTCACTGCGTAGGACCTATGAACTGGTCAAACTTTTACCCATACAATTTacttctttttagttttttgtatcatttgagtaattctttattttactaaatattttagGCTTTGGTAATGACAAACTACGCGATCGCGCCTTGTCAATATCTTATCTAAGGAGGCATCCTTACGTTTTACTGCccgtaataataacaataataataataataataataataataataataataatcgtatctaaaacaaaattctccgagtggatcgtgattggttctccgctAGCATATTTGTAAcagtaattggaccgagtggagtacaatttgtataggaaatagatttttttttcgaaacaATAAGGAATTAATTGTATGCGTGAACCGATCGGactttttagtaattttaaTAATACGGCAACCGTAAAAACAAGCTTCTATCTGACGTCTTTTCGTTATAGAAAGTTGCTAAAATGAAGCCACGCTTTGattaaatattttagttttgcaaCTTTGTTTTCTTAACACTTCTCGTCAAAGTTCTccgtaaaataatttctttctttcgcaAACGAGTTCTAATTACTATTTTATATTAATCGTATTTATAACAAAGTTCGCAATTAATGAAGTTTTTGGAGaactttttttgcaaaaagtCAGTAGcactttccattttttttttcaaatctgtAAGAAGACATAAGTAATTGACTTgcgaattaaaattaaaattaaaattgcaaaCTGTTCAAATTTGAGaactgtaattggacacccacgtgatcgcGCGCCAATGACGTGACTAATATAAATAGTaacaataagaaataaaacgcaaactgcggtgataaacatggcaataaaacgcaaactgcggtgataaacatagcaataaaacgcaaactgcggtgataaacatggcaataaaacgcaaactgcggtgat

Protein

Uniprot

Uniprot term	Description
Q9CQ19	Myosin regulatory light polypeptide 9 OS=Mus musculus OX=10090 GN=Myl9 PE=1 SV=3
Q64122	Myosin regulatory light polypeptide 9 OS=Rattus norvegicus OX=10116 GN=Myl9 PE=1 SV=2
P24844	Myosin regulatory light polypeptide 9 OS=Homo sapiens OX=9606 GN=MYL9 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00036	EF-hand_1	EF hand	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR050403	Family	Myosin Regulatory Light Chain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23049	MYOSIN REGULATORY LIGHT CHAIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016460	Cellular Component	myosin II complex	Interproscan
GO:0032036	Molecular Function	myosin heavy chain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12757	MYL12; myosin regulatory light chain 12	-	Exosome	ko04147	deepkoala