Detailed information of FUN_027956-T1 in Siderastrea siderea

Genomic Location: contig_28:1330967...1408432
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10493
all species →
Rod_CRough deal protein C-terminal regionFamilyInterproscan
PF10245
all species →
MRP-S22Mitochondrial 28S ribosomal protein S22FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052802
all species →
FamilyKinetochore-associated RZZ complex proteinInterproscan
IPR019527
all species →
DomainRZZ complex, subunit KNTC1/ROD, C-terminalInterproscan
IPR036322
all species →
Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR019374
all species →
FamilySmall ribosomal subunit protein mS22Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15688
all species →
KINETOCHORE-ASSOCIATED PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000070
all species →
Biological Processmitotic sister chromatid segregationInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0005828
all species →
Cellular Componentkinetochore microtubuleInterproscan
GO:0007094
all species →
Biological Processmitotic spindle assembly checkpoint signalingInterproscan
GO:0031267
all species →
Molecular Functionsmall GTPase bindingInterproscan
GO:1903394
all species →
Biological Processprotein localization to kinetochore involved in kinetochore assemblyInterproscan
GO:1990423
all species →
Cellular ComponentRZZ complexInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11577KNTC1, ROD; kinetochore-associated protein 1-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_027956-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
11TPM > 0
7Conditions
24.2Max TPM
1.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 3 1.66 24.24
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 2 1.25 18.22
Whole organism 4 4 17.81 22.34
unannotated 1 1 8.58 8.58
live coral tissue/skeleton 1 1 6.61 6.61

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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