Gene detail

Detailed information of FUN_028015-T2 in Acropora pulchra

Genomic Location: ptg000021l:14897768...14922675
NR annotation: XP_029213552.1, dnaJ homolog subfamily C member 3-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_028015-T2

CACGATGATGTGCGCCAACACTGAAATGAACTGCGGTTCTCTCTGTCAGGACAGAAAATAAGCAAAACATCGATTGCCGGGTTAAGGCCGAAAATGCGTACTTTGAATCAGTTTTTCTCCCCTTTGCATTTGATATTCTTCGGCCTGGAGCTGAGGATCATCGTTGTGTCCAGTAAATTGTCTTCAGTTGAGATTGCAAATCATCTGGAACAAGGAAGAAAATTACTGTCCTCTGGACAACTGAGCGATGCCTTGACTCATTATCACGCAGCCGTGGAGGGTGATCCTGATAATTTTTTGACTTATTTTAAAAGAGCAACAGTGTTTCTTGCAATGGGTCGCTCAAAGTCAGCGTTGCCAGACTTAGACAGAGTTCTTGAACTCAAGCCAGACTTTTTCCAGGCACGTCTTCAGAGAGGAAATCTTTTGCTAAAACAAGGACGGCTTGATGAAGCACATATTGATTATGAGGCGGTGTTACGCAAAAGTCCTGATAATCCAGAGGCACTTCAACAGTTAAGTGTAATTGAACCAATCAGAAGAGACATATTAGATGCCAAGAACTATATGGACATGGGTGATTATCCAGCAGCAATAGAACTTTTAGGGAAGGCAATAGAGTTAGCTCCTTGGGATTCTGAACTAAGAATGATGAGAGCTGATTGTCATAAGCAAATGGGTGATTATATTGCTGCTATTTCAGATATTAAGCCTACGACAAAATTAGTTAGTGATAACACAGGAGCTTATCTCCAGCTCAGTGAACTCCATTACGACATGGGAGAGTTAGAAGATGCTTTAAGGGAAATACGAGAATGTCTCAAGTTAGATCCAGATCACAAGGATTGTTTTCCTTTTTATAAGAAAATGAAAAAGCTGAATAAACAGATGACTTCTGCTCAAGACTTAGTTAACAGTGGAGATTATGAGGAAGCACTATCCAAACTAAAGCAAGCTCTAAAGACAGAGTCTCAAGTAACATCACTTCTAAATAAAGTAAAGAGGCAGATGTGTCACTGCCACCTCAAGCTTCAAGATCCCAACGAAGCAATCCAACAGTGCAATGAAGCATTGAAACTGGATGAGAATGATGTGGATGCGCTTTGCGACAGAGCTGAAGCGCATATACTTAATGAAATGTATGATGAAGGTCAGTGACAGCGATTGTGGTTCTCCATCTTAGTGAAGATGCCGTCCATGGAAGACTAAGCATTATTATTTCTTTGCGGTGCACCATATTGAAACCTGCATTAATATGTCAAATTCAACTTCAATTAATAAGATTCAAACCACTTTATATAGGTGTCATTTGGTGTGCACTGAGAACTTCTCATTTACTACTGTGTGGTTAGGGTTCTGCTTATACACCTTATTCCAAAATGGCGGCCAATAAATTATTCTTTGGTTTGCATGTTAATTAGCCTCTATGCCTCGTCAGCATGTATAAAACACAAAAGAATTTTGAAGTGAAAATGAGGCAAACAAAAGAATATTTTATTTGCCGCCATTTTGGCATAAGATGTATACTTAGTGTCAGCTAGAGAGACACTTTGTGACGTGTACATAATGTGTCAGGAATCTTATTTAATACACTCCAAGGATGTTGTGGATGTTGCCAGGCTTTCAATAAGCAGTGATGGCAAACGGCAAGGAGTATCAGAAACTGTACTTCATGTAAGGTTGGCTATATTTTCCTTCACTTGAGGTAATTGAAGAAACATTCTCAGCAATCCGCCACCTAACGTTTGCTGGTCTTCTCTGTTTTACTGAAACCCTATTGTCCCATACAATTGCCTGATTGTGGCACTGAGGTTGTCATGTATAATTATAGCAATACTGTTTTTTATTGAGTTTGTTGTGTTACTTTTACTTCGCTGCAGCTGTAAATGATTACCAACAAGCAAAAAATATTAATGAACACTTAAATAAGGTAGGTTGGCTAATATGTCTTGTACATTTTTTGTAAAAGTCAAGTAAGCAATTAAGACCCAACTATGGCCAGAGAAGTGATTGGGGTTTGCTGGTACCATTCTTAACTTGTCCAAGTCTTATCTTTCGAGACCAAATTGACCATGTTTATTGTAAGTCTTTGTTAAGAATTCTGAGATAATTTGACGAGAACATAGTCTCGAAAGTTATACTTGCATTTATAACTGCGCAGTTTGAATATTGCAGTTCTTCTATGCTTTCGACTACCAAATTATACAGTGAAAAGGTTACATCAAATCCAGAACATTGTTGCTTGTTAATTTCTATGTCACCGGGTACACGGAAATATATCCATATTACTCCTGCCTTAGTACATCTTCATTGTCTGCATGTCTCATGTTATTTAAGCATCTTCTTTTTGTCTATACATCATTGAATGGTCTATGCCTGCAATAATATCTAAAGAAAGTCCTGCAACATCAGAAATCAACTAGGTCTCTACGCTCGAACTTTCAAGACCTGCTGATGCAGGCAAATTGTAAAGGCGAAACATACGATGATATAGAGCTTTATCTGTATGTACTCAAAAGACTTGGAACACTTTCTTTTGGAAGTACAGCAATCCAGTACAGAGCTATCATTTAAGAAAAAAGTCAAGCCCTTACATTTTAAACTCTATCATATTTTTAATTTTTTAGCGTCTAGTTTTTAGGTGTAGTGTTAGGTTTTTGTTTGTAAGTTTCTTATATTGAATTTGTGGACTTAGGAATAATTTTGTAAAGCACCTCGAACATGTACTGGATGTGCGTGCTATGTAAATGAACTATTAGTATTATTACTCTTAGCCCAGTGTAATATAGTGTTAACGCTTCTGGTTATTGAAAGAAATGTTTGTGAAGTGTGGTTGAGAGACGAATAGGCATAGTTAAGAATTGCGGTTCAGCTTGTTGGTGACTATTGGTTTACTGTGTTGTAGGTCCAGGAAGGACTTGAAAGAGCGCAGAAACTACAGAAGCAATCAAAGAAACGTGACTATTACAAAATATTAGGACTGAAAAGGTAGTTAATGCCTTCCTTACAAGACTGATTAAGACTGTCGCTCTCTTAGAGCGGTTTTCAAATGACTGTCGAAAAACCAAATCCAAAGCAATTACTCCGACCAATCACAACAGGCCCAAACAGCTCCATGAACCAATCACAATTCCTAGCAATTACCTGTAACGCGCCCGAAGCGCGATTTGTTTTGGTTTTGCTTTTCATTGGTTGAAAAACTGGCGCGAGTCTTTTAAGCCAATCACCAAGCGTAGCAATCGCAATCACGTAATTGCTTTCGACAGTCATTTGAAAACTGCTCTATTTGACGTGGTGAATGTGAGGTTAACTAGATAATTTGTTAAATTGCAAACCGAACATGGAAAACTTTCGATATAAAACTGGTAAAACATCATCATTATTCCATTTCAGGTCAGCAACAAAGAAAGAAATATTGAAATCGTACAGGAAGCTTGCAGTGCAATGGCATCCTGACCAATATAAAGGAGAAGACAAGAAAAAGGCCGAGAAAATGTTTATTGATGTTGCAGCAGCGAAAGAAGTGCTGACGGACCCTGGTGAGTGGAGACAAATTATCAACACGATTGTGGGGGAGGGGTGGTCAGTGTTGAGTACTCCTCGAATCAACGATCTGACTATTCGGAAACGTTAGCCCTTCGTCCGAGGGAATCAGCTTCGTAATCTTTCGGAAACTGAAGATTACGAAGGTGACGCTTCGAGTCTTTGCCTTTCGGCAGAGCAAACCCTAACCATAACCTCAACTTGTTGATACCAATTTCTATGTTGAAGTGACGTTTTCTTAACTGCAGCCGTAGAAGCTTCCTAACTCTCCACTACCAATTATCGTTATTGGGCGTTGACTTGTGTGAGCGCAACCTTCACCCTAAGCACTGGTTCGAAGTGTTTAAATTCGCTGATGATATCAGACTTGTCTGGATTTTAGGTGGCGTAAGGATTGAAGCGACAAGATTTAACTCCTCGTGTTAGGGGAATGTTTTTTTTTTATCATTTGCTTCTGCGAAAAGTCATTTATTTTGCTTGTTTTCCTCCAGAAAAACGTGCTAAATATGACAATGGAGAGGACCCACTTGATCCCGAAGCTCAGCAAGGTGGCGGCAATCCGTGGCAGCATGGTGGATTTCCTTTCGGAGAAGGATTTCAATTTAAATTTCATTTCAATTGAGACGTTATTATATTGTATATTTCGTAATAAAATTAGGAACTCTTTGGTGACCACACACATGTGAAAATAGTCAGTGATTTTGATATTACTGCATAACACAACGCATCAGTATTGGCTGAAAGAAAACTCACCCCTTTTTTTGCAACGGACAAGAATCAACCAAAACTAATTTATTCCCGCCACAGAGTTTTCCCTCGTTTTCTCGTGTCGGCTACACCTTCCTTTTTCTTCGACGTGATTGGTTCGTTGGATGTGTATTGTTACAAAATTAGTTTACAAGGGAATGCATTTTCAACCAAATCAAGTCAGATGTCTTTTTTGTGGAATTTATACGTAATTAAACGGTTAGTTCTCTTCTATATGTTACTGTTTTATTTTCATCGAAATACACAGACAGCTTTGGCCCTTGCCATGTTACTGGAGGTTTGTTATCCAACTGTGTTCTTGTTATTTTCCTGAGATTAATAAGCTGCATTTGGCGCGTCGTAGGGTTGCTGTAATTTTATCGTCCTCTTCTTAATTTGGTGGTATTGGACATGTATTTATAACAGTGTAAGAATCCATCGAACTGTCCGCTATTTTACAATAAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13217	DnaJ homolog subfamily C member 3 OS=Homo sapiens OX=9606 GN=DNAJC3 PE=1 SV=1
Q91YW3	DnaJ homolog subfamily C member 3 OS=Mus musculus OX=10090 GN=Dnajc3 PE=1 SV=1
Q5ZI13	DnaJ homolog subfamily C member 3 OS=Gallus gallus OX=9031 GN=DNAJC3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006238 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF12895 all species →	ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR051727 all species →	Family	DnaJ Homolog Subfamily C Member 3 Co-Chaperones	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44140 all species →	LD25575P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0034975 all species →	Biological Process	protein folding in endoplasmic reticulum	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0051787 all species →	Molecular Function	misfolded protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06072	DOHH; deoxyhypusine monooxygenase	EC:1.14.99.29	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.