Detailed information of FUN_028064-T1 in Siderastrea siderea

Genomic Location: contig_28:2581020...2591553
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_028064-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR052584
all species →		FamilyPre-mRNA Spliceosomal U2 snRNP Complex ComponentInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12785
all species →		SPLICING FACTOR 3BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005689
all species →		Cellular ComponentU12-type spliceosomal complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_028064-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_028064-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
129.1Max TPM
6.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 95.05 129.13
unannotated 1 1 80.72 80.72
live coral tissue/skeleton 1 1 60.71 60.71

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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