Gene detail

Detailed information of FUN_028088-T1 in Acropora pulchra

Genomic Location: ptg000021l:15674571...15694197
NR annotation: XP_029207824.2, sodium/potassium-transporting ATPase subunit alpha-1-like isoform X2 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_028088-T1

ATGAGCAAGGCTAAAGGAGGAAAGGCTTCATCAGAGGAGAAAGAAAATCTGTTTGGAAGAAGCCAAAGTTATCGGGTTGCCACCACTCCTCTTGTTGCTGATGGCTCCAAAGGCAAAAAGAGTAGGAAAGACAAGAAAAAGGAGAAGAAAGAGAACTTAGAAGACCTCAAGAAGGAGTTGGAAATCGATTGGCACACCATTCCTATTGAAGAGGTTTACTCTCGTTTGGAGACCAATGTCGAAACGGGTCTATCAAAAGAAAAGGCTGCAGAAGTTCTGCTGCGTGATGGTCGAAATGCATTGACTCCCCCACCCACGACTCCTGAGTGGATCAAGTTTTGTAAACAACTGTTTGGAGGGTTTGCTATGCTGCTATGGGCTGGAGCTCTTTTATGTTTTATTGCCTATGGTATCCAGGTAGCTACAGAGGAAGAACCACCTAGTGACTATTTATATCTTGGAATTGTGTTATCTGTTGTGGTTATCATCACTGGTGTTTTCTCATATTACCAGGAAGCCAAGAGTTCAAGAATCATGGAAAGTTTCAAAAATCTAGTTCCTCAAGAAGCACATGTGCTGCGCGGTGGTGAACGGTATACAATCAACGCTGAAGAAGTAGTCGTTGGTGATGTTATTTTTGTCAAAGGTGGTGACAGGATTCCAGCTGATCTTCGAGTAGTGGAAGCTACTGGATTTAAGGTTGACAACTCCTCACTCACTGGTGAATCTGAACCCCAAAGCCGTTCCAATGAATGTACCAATGAAAATCCTTTGGAAACTAGGAACCTTGCATTTTTCTCTACCAATGGACTCGAAGGGAATTGCGTCGGCATTGCTGTCCAGACTGGGGATAACACCATAATGGGACGAATTGCTAACTTGGCTAGTGGTCTTGGAAGTGACAAAACTCCAATTGCCATTGAGATTGAGCATTTCATTCACATTATTACTGGTGTTGCTGTTTTTCTGGGGGTGACCTTTTTCATCATTGCATTCATTCTGGATTACCAACCTGTTGAAGCTGTCGTCTTTTTGATTGGTATCATCGTGGCTAATGTCCCAGAGGGTCTTCTTGCAACCGTTACGGTTTGTTTAACACTCACTGCAAAAAGGATGGCATCTAAAAACTGCTTGGTGAAGAATCTGGAAGCTGTAGAAACACTTGGCAGTACCTCAACCATCTGTTCTGACAAAACAGGAACCCTGACACAGAACAGGATGACAGTTGCTCACATGTGGTTCGATGGCACAATTATTGAAGCTGATACAACAGAAGATCAATCAGGAGCTTCATTTGATAAGTCATCTGATACATGGAAATCTCTAGCCCGTATTGCAGCACTTTGCAACAGAGCTGTTTTCAAGGCAGACCAGGACCATGTCCCAATTCTGAAGAGGGAATGCTCAGGAGATGCTTCAGAATCTGCGTTAATGAAGTATGTCGAACTGTCAGAGGGTAGCGTTAAAGAAATGAGAGAGAAGTACAAGAAGGTTGCAGAAATCCCTTTTAACTCTACCAATAAGTACCAAGTGTCGGTTCATGAAAATCCAGATCCAGATGATAAGCGTCACATTCTGGTGATGAAAGGTGCACCTGAGAGGATTTTGGATAGGTGCTCAACAATCATGGTAAATGGAGAAGTTGTTGAGCTGGAGGAGAAGCAGAAAGAGTCTTTCAACACGGCATACCTTGAGCTGGGAGGCATGGGAGAGCGTGTGCTTGGCTTTTGTCATCTTTATCTGCCCTTGGAAGAGTTCCCAGAGGGTTTTGAATTTGTTACTGATGAGCCTCCAAATTTCCCACTTGAAAACTTGTGTTTTGTTGGTTTGATGTCCATGATTGATCCTCCTCGTGCCGCTGTGCCTGATGCTGTCAGCAAATGCCGCAGTGCAGGAATCAAAGTTATCATGGTTACTGGTGATCATCCCATCACAGCCAAGGCTATTGCTAAAGGCGTCGGAATCATCTCAGAAGGAACAGAGACTAAAGAGGATGTTGCTGCTCGTCTGAATATCCCTGTTGAAGAAGTTGACCCACGAACGGCCAAGGCCATTGTTGTTCATGGTGCACAGTTGAAGGAAATGAAGAAAGATGATATAGACGAGATTCTAATGTATCACACAGAGATTGTGTTTGCCAGAACATCACCACAACAGAAACTCATCATTGTTGAGGGATGCCAACGTCAGGGTGCTATTGTTGCTGTGACTGGAGACGGTGTCAACGACTCACCAGCCTTGAAAAAGGCCGATATCGGTGTTGCCATGGGTATCGCTGGCTCAGATGTGTCCAAACAGGCTGCCGACATGATTCTCTTGGATGACAATTTCGCTTCAATTGTCACTGGAGTTGAAGAAGGTCGATTGATCTTTGATAACTTGAAGAAGTCCATTGCATACACACTAACAAGTAACATTCCTGAGATCAGTCCATTCTTGATGTTCATCATTTTGGACATTCCTCTTCCCCTTGGCACAGTCACTATTCTTTGCATTGATTTGGGTACTGACATGGTTCCAGCTATCTCATTGGCTTATGAAAAGGCTGAGTCAGACATCATGAAACGGCAACCTCGTGACCCAATCAATGATAAGCTTGTGAATGAAAGACTGATTGCTATGGCATATGGCCAGATTGGTATGATTCAGGCCACAGCTGGTTTCTTTACCTACTTTGTCATTATGGGAGAAAGTGGTTTCATTCCTTACATGTTGTTTGGCTTGAGAAAAGAGTGGGATAACAGAAATAATTTTGCTTTAGAAGATTACTATGGACAGGAATGGTCATATGCACAGCGTAAAGAATTGGAGTTCACATGCCACACAGCATTCTTTGTGAGCATTGTGATTGTACAGTGGGCTGATCTGATCATCTGTAAAACAAGGCGTAATTCACTCTTCACCCAGGGAATGACCAACTGGTTCTTGAACTTTGGTCTTGTCTTTGAAACATGCTTGGCTGCCTTTTTGAGTTACACCCCAGGAATGTCCAATGGACTGAACATGTATCCGCTAGAGTGGCAGTGGTGGTTCCCAGCCTTTCCATTTAGTTTGGTGATTTGGATCTATGATGAAGTACGTCGTTACATTCTGCGCCGATATCCAGGATGCTGGTTGGACAGAGAGACCTACTATTAG

Transcript

FUN_028088-T1

AATACAAAGTCGACTTTGTCAAACACGCAATATAAACAGTTACTCTTTTGCTATTGGGTGTCGAAGCCTCAGTTTATTAATTCGGTATTCGGCCAACTACTGGCGATAAAGTTTCTTAACACGCAGTTGTGATAGAGTCTCCGCACCGGTCGGTTGATCGTACGATCGTGGGATTCTTGAGCACGCTCAGTAAGGTTCGGTGGCTTTTCAACCGATTGTTCCCGTTACTGAGTGACAGTCCATTTTACAACTGGTTCAGGCGGGTTAACCTTCTGAGTCTGATTTCGACCGCTCACACGCCGCAAAAATGAGCAAGGCTAAAGGAGGAAAGGCTTCATCAGAGGAGAAAGAAAATCTGTTTGGAAGAAGCCAAAGTTATCGGGTTGCCACCACTCCTCTTGTTGCTGATGGCTCCAAAGGCAAAAAGAGTAGGAAAGACAAGAAAAAGGAGAAGAAAGAGAACTTAGAAGACCTCAAGAAGGAGTTGGAAATCGATTGGCACACCATTCCTATTGAAGAGGTTTACTCTCGTTTGGAGACCAATGTCGAAACGGGTCTATCAAAAGAAAAGGCTGCAGAAGTTCTGCTGCGTGATGGTCGAAATGCATTGACTCCCCCACCCACGACTCCTGAGTGGATCAAGTTTTGTAAACAACTGTTTGGAGGGTTTGCTATGCTGCTATGGGCTGGAGCTCTTTTATGTTTTATTGCCTATGGTATCCAGGTAGCTACAGAGGAAGAACCACCTAGTGACTATTTATATCTTGGAATTGTGTTATCTGTTGTGGTTATCATCACTGGTGTTTTCTCATATTACCAGGAAGCCAAGAGTTCAAGAATCATGGAAAGTTTCAAAAATCTAGTTCCTCAAGAAGCACATGTGCTGCGCGGTGGTGAACGGTATACAATCAACGCTGAAGAAGTAGTCGTTGGTGATGTTATTTTTGTCAAAGGTGGTGACAGGATTCCAGCTGATCTTCGAGTAGTGGAAGCTACTGGATTTAAGGTTGACAACTCCTCACTCACTGGTGAATCTGAACCCCAAAGCCGTTCCAATGAATGTACCAATGAAAATCCTTTGGAAACTAGGAACCTTGCATTTTTCTCTACCAATGGACTCGAAGGGAATTGCGTCGGCATTGCTGTCCAGACTGGGGATAACACCATAATGGGACGAATTGCTAACTTGGCTAGTGGTCTTGGAAGTGACAAAACTCCAATTGCCATTGAGATTGAGCATTTCATTCACATTATTACTGGTGTTGCTGTTTTTCTGGGGGTGACCTTTTTCATCATTGCATTCATTCTGGATTACCAACCTGTTGAAGCTGTCGTCTTTTTGATTGGTATCATCGTGGCTAATGTCCCAGAGGGTCTTCTTGCAACCGTTACGGTTTGTTTAACACTCACTGCAAAAAGGATGGCATCTAAAAACTGCTTGGTGAAGAATCTGGAAGCTGTAGAAACACTTGGCAGTACCTCAACCATCTGTTCTGACAAAACAGGAACCCTGACACAGAACAGGATGACAGTTGCTCACATGTGGTTCGATGGCACAATTATTGAAGCTGATACAACAGAAGATCAATCAGGAGCTTCATTTGATAAGTCATCTGATACATGGAAATCTCTAGCCCGTATTGCAGCACTTTGCAACAGAGCTGTTTTCAAGGCAGACCAGGACCATGTCCCAATTCTGAAGAGGGAATGCTCAGGAGATGCTTCAGAATCTGCGTTAATGAAGTATGTCGAACTGTCAGAGGGTAGCGTTAAAGAAATGAGAGAGAAGTACAAGAAGGTTGCAGAAATCCCTTTTAACTCTACCAATAAGTACCAAGTGTCGGTTCATGAAAATCCAGATCCAGATGATAAGCGTCACATTCTGGTGATGAAAGGTGCACCTGAGAGGATTTTGGATAGGTGCTCAACAATCATGGTAAATGGAGAAGTTGTTGAGCTGGAGGAGAAGCAGAAAGAGTCTTTCAACACGGCATACCTTGAGCTGGGAGGCATGGGAGAGCGTGTGCTTGGCTTTTGTCATCTTTATCTGCCCTTGGAAGAGTTCCCAGAGGGTTTTGAATTTGTTACTGATGAGCCTCCAAATTTCCCACTTGAAAACTTGTGTTTTGTTGGTTTGATGTCCATGATTGATCCTCCTCGTGCCGCTGTGCCTGATGCTGTCAGCAAATGCCGCAGTGCAGGAATCAAAGTTATCATGGTTACTGGTGATCATCCCATCACAGCCAAGGCTATTGCTAAAGGCGTCGGAATCATCTCAGAAGGAACAGAGACTAAAGAGGATGTTGCTGCTCGTCTGAATATCCCTGTTGAAGAAGTTGACCCACGAACGGCCAAGGCCATTGTTGTTCATGGTGCACAGTTGAAGGAAATGAAGAAAGATGATATAGACGAGATTCTAATGTATCACACAGAGATTGTGTTTGCCAGAACATCACCACAACAGAAACTCATCATTGTTGAGGGATGCCAACGTCAGGGTGCTATTGTTGCTGTGACTGGAGACGGTGTCAACGACTCACCAGCCTTGAAAAAGGCCGATATCGGTGTTGCCATGGGTATCGCTGGCTCAGATGTGTCCAAACAGGCTGCCGACATGATTCTCTTGGATGACAATTTCGCTTCAATTGTCACTGGAGTTGAAGAAGGTCGATTGATCTTTGATAACTTGAAGAAGTCCATTGCATACACACTAACAAGTAACATTCCTGAGATCAGTCCATTCTTGATGTTCATCATTTTGGACATTCCTCTTCCCCTTGGCACAGTCACTATTCTTTGCATTGATTTGGGTACTGACATGGTTCCAGCTATCTCATTGGCTTATGAAAAGGCTGAGTCAGACATCATGAAACGGCAACCTCGTGACCCAATCAATGATAAGCTTGTGAATGAAAGACTGATTGCTATGGCATATGGCCAGATTGGTATGATTCAGGCCACAGCTGGTTTCTTTACCTACTTTGTCATTATGGGAGAAAGTGGTTTCATTCCTTACATGTTGTTTGGCTTGAGAAAAGAGTGGGATAACAGAAATAATTTTGCTTTAGAAGATTACTATGGACAGGAATGGTCATATGCACAGCGTAAAGAATTGGAGTTCACATGCCACACAGCATTCTTTGTGAGCATTGTGATTGTACAGTGGGCTGATCTGATCATCTGTAAAACAAGGCGTAATTCACTCTTCACCCAGGGAATGACCAACTGGTTCTTGAACTTTGGTCTTGTCTTTGAAACATGCTTGGCTGCCTTTTTGAGTTACACCCCAGGAATGTCCAATGGACTGAACATGTATCCGCTAGAGTGGCAGTGGTGGTTCCCAGCCTTTCCATTTAGTTTGGTGATTTGGATCTATGATGAAGTACGTCGTTACATTCTGCGCCGATATCCAGGATGCTGGTTGGACAGAGAGACCTACTATTAGGCTACAACAGTCCAGCTTGCACTCCAGTTTAGGTTAACATTTATATCACTGCAAAATTAATAATTACATTTAGGTCGCAATTTTTTTTCATAGTCAATATTCAAATGTATTACACTTAAACCCCTTTCGATAATAGGCAATGAAAGCTTGAGCATCTTTTCAGGAACAGTGGACACCAACTCGAAATGCGCCAAAATCCTGGTATTTTTTGTCTATGATCAGTGTTCTTATAGCTTATCCTTAGAATAAGGAAGGCCTTGTAATTTCTTGTTGCTGTCCATTGCTCAAAAACCCTAATGTTTAAGAAGTTCGCAGTAGAGTCATAGATTTTTTTGAAGATGTCTTTGGTCTGAGTCAAATTGTTAGTTAACCCAGTAATTGAATAATTCAAAGCGAGGTTTTTGTATTAGAAAGAAAAAGTTTCAAGGCCCTTCATTTCTGTTGTGTTTCCACTATTGAAGTGTTGAAGCCCAGCTATACAAAATGACTGAAAGAAAAGTGGGTAATAATTCTTGTTGCTCAACTTATTTTATTCAGCAGTAATTTTCTCTCTTTAATTTAAAAACCACTGCTTATTTATGATTATCAAATGAACGTGCAGTTTGTTGTTAATTTTGGTTTACCTTCAGCACTGTTCTGGTTAGGCAAATTGTGGACTCAGTGTAATTTTCGTTTTACGATTATGGACGAATCCAGAGTAAATAGAGCTCTTTTTCTAGTTATCTTCTAGAAATGAAAAAATCGAGATTAGGCCTTTTAGTTAGCCGTGTGTAACCACATACAGTAGGTTTTACAGTAGTGTTTAACGTATGGAAGGATTTGTGTATCCCATAATCAGTTGCGGTTTTCATATCCTTAGTAACCGGTAATCAGTATACCTTTTTTTCAAATGAGCCAAGGTTCCGTTTTGAATTGGGGAAACCTCTTGTTATTTATCCGTACCATTAATTTGTAAGTACACTTATCCTATGCAATTATTTGTCAAAGCGGATTGTATCTTATTTGAAAAAGTCTGACAGGATTTGCCAGTAATATTGCAATAAATACAATTCAACTTTACTTTTGATAAATTTAGCCTGCATTGGGACTCGAGGTGACGGGACACACTTTCTACACTTCCAGGGCCGAGTTCAACGCCTGATTAAGCTAATCCTTGGTTAGCGTAAATTTTAATAGACCTTTTCAGCTTGTACATTTTGTTTTCCCATTTCAGACCACGTGATGCCCTCATGGGAATTTTCCTTTTGTTTTTTCATTAGTTATGCGTAAATTTGCACGTGCATAAGACGACATTTGAAAGAAACTATTCCCTCGAGTACCATCACGTGGTCTGAAATGAGAAAACAAAATGTACAAGCTGAAAAGGTCTATTGCTATTTGTCTGCGGCTAAAGGAGGTTTTGTCGCAAAATTGTGGCCCGAGAAGGTTATAAATTACAAATATTTTTTCCTTGAACCTCAATCTTGTGAAACATTCTCCTTTAACGGTAAATAAATAACAATTAAAATTTTCCGCTAATCCAGGATTTGCTCAAGCGGGCTTTGAATAACTGGGCCCATGGTGTCAACTTGTTTTTTTTTTTCCCTTCCTCCTTTGGCTCTATTTTATTTTATTTTTTTGATGTTCATTACTGATAGCCAAAATCAGTATTTTATAGAAATAAGATCATTTTGATGCATATACCTGAATTGTTTCGCTTCTATGCATTTTATGAATATTGTGAAAAGCCTCGTTATATCCGCATAGCACTGGAACGTTGTGGTCCGTTGTACAAACCTGAAGTTTTGAAGAAAATCGAAAAAGAAACCTTATTTCTGTGGAAGCAAACTGCGCTTCTTTGCACGTGTAATTTAGAAGGCGGGCGAAATGTTTATCACTTGGCGGAATAATGACCTCACCTCCTCATCTTTACTCCTTCAAATTGTGGCCAAAAGAGAATCCCCATGTCTCCAAAAACACCTTATGGCAAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18907	Sodium/potassium-transporting ATPase subunit alpha-1 OS=Equus caballus OX=9796 GN=ATP1A1 PE=3 SV=1
P05023	Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens OX=9606 GN=ATP1A1 PE=1 SV=1
P13607	Sodium/potassium-transporting ATPase subunit alpha OS=Drosophila melanogaster OX=7227 GN=Atpalpha PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001577 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00690 all species →	Cation_ATPase_N	Cation transporter/ATPase, N-terminus	Domain	Interproscan
PF00122 all species →	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF00689 all species →	Cation_ATPase_C	Cation transporting ATPase, C-terminus	Family	Interproscan
PF00702 all species →	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan
PF13246 all species →	Cation_ATPase	Cation transport ATPase (P-type)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004014 all species →	Domain	Cation-transporting P-type ATPase, N-terminal	Interproscan
IPR018303 all species →	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR023299 all species →	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR008250 all species →	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR006068 all species →	Domain	Cation-transporting P-type ATPase, C-terminal	Interproscan
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR050510 all species →	Family	Cation transport ATPase (P-type)	Interproscan
IPR005775 all species →	Family	P-type ATPase subfamily IIC, subunit alpha	Interproscan
IPR044492 all species →	Domain	P-type ATPase, haloacid dehalogenase domain	Interproscan
IPR001757 all species →	Family	P-type ATPase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43294 all species →	SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005391 all species →	Molecular Function	P-type sodium:potassium-exchanging transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006883 all species →	Biological Process	intracellular sodium ion homeostasis	Interproscan
GO:0019829 all species →	Molecular Function	ATPase-coupled monoatomic cation transmembrane transporter activity	Interproscan
GO:0030007 all species →	Biological Process	intracellular potassium ion homeostasis	Interproscan
GO:0036376 all species →	Biological Process	sodium ion export across plasma membrane	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:1990573 all species →	Biological Process	potassium ion import across plasma membrane	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0008556 all species →	Molecular Function	P-type potassium transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01539	ATP1A; sodium/potassium-transporting ATPase subunit alpha	EC:7.2.2.13	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.