Gene detail

Detailed information of FUN_028149-T1 in Acropora pulchra

Genomic Location: ptg000021l:16229672...16245035
NR annotation: XP_029183546.1, NADH-ubiquinone oxidoreductase 49 kDa subunit-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_028149-T1

GACTCAATATGGCGGCGAATGCAGTTCGTCAATTTAGTCGGCTTTTTCATCGCCAATCCCTTCTTCGGCGGGTTCCTGTGGTTTCATCCGTACGTTTCCTGCGACGGCTTCCAGAGAGTGAGGTTGAAGATGAGAATAAACCTATGAAGCTACCAGGTGTGCTGTCCACCATGACAGGAACAGTTTTGTACCCTGATGAAGAATCTGCCAAGTGGGACGTTGATGTTCCAGCCCAGGAAAAGATTGTGACAACAATGACAATGAACTTTGGACCTCAGCACCCAGCTGCCCATGGCGTGTTGAGACTTGTTCTGGAGCTTGACGGAGAGGTTATTACCCGTGCTGATCCTCATGTTGGATTGCTTCACCGTGGCACAGAAAAACTGATTGAGTACAAGACATACCTTCAGGCATTGCCATATTTTGACCGGTTGGACTATGTGTCTATGATGACAAATGAACAGTGTTACTCACTGGCTGTGGAAAGGCTCTTAAACATTGAAGTTCCAGAAAGAGCCAAATGGATTAGAGTATTGTTTGCTGAAATTACCAGACTATTGAATCACATCATGGCTGTTGGCACCCATGCTCTTGATGTGGGTGCAATGACTCCATTCTTTTGGCTGTTTGAGGAAAGAGAAAAGATGATGGAGTTTTATGAGCGTGTGTCAGGAGCCCGCATGCATGCTGCTTATGTCAGACCAGGGGGAGTTGCCTTGGATTTACCACTTGGTTTGATGGATGATATATACGACTTTATTTCCAAGTTTGCACAGCGAATCGATGAAACTGAGGAGATGTTAACAAACAACCGAATCTGGAAGCAGCGCACTGTAGATGTTGGAGTTGTTTCTGTGGAAGATGCCCTGAACTATGGCTTCAGTGGAGTTATGTTGCGTGGTTCTGGTATCAAGTGGGATCTTCGGAAGGCACAGCCATATGACGCTTATGATAAAGTGGAGTTTGATGTTCCTATTGGCAAGAATGGAGACTGTTATGATAGATATTTGATCAGAGTGGAAGAAATGCGTGAAAGTTTGAACATCATTGAACAGTGCTTGAACAAGATGCCGCCAGGCGAAGTCAAAATAGATGATGCAAAAATCTCGCCTCCTAAGAGATCTGAAATGAAAGAGTCCATGGAGGCTCTTATTCATCATTTCAAGCTGTACACCGAAGGATACCAAGTCCCTCCTGGCGAAACGTACACGGCCATCGAGGCTCCCAAGGGAGAGTTTGGTGTGTACATTGTGTCTGACGGCAGCAGCCGACCTTACCGATGCAAGATAAAGGCCCCAGGCTTCGCGCATTTGGCTGCACTGGATCTGATTTCTCAAGGTCATATGTTGGCAGATGTTGTAGCAATTATCGGTACACTGGATGTTGTATTTGGGGAAATCGATCGCTGAAGTATTATCCAACTCAGAGACTTGCTTAGTGGCGGAGACCTATTTGAAGACATCGTTTGAATCCGGTGTGGATCATTAGATGACTGACCACAAATTTGGAAGACTGTGAATTTTCTGGCTCCAAAACAATATGAATTCTGTTATTTTGTAAAATAGACTCTATAAGATCAAAATAAACATTCTTAAAATACTGAAAGATGTCTATGACTGGAGGGGTTGGCAGATGTGTGGATGTGCAGAGGGTGTCAAGCACACAACACAAATTAGCATTTAACCAAAATATATAGACGTTGATGATGAAATGGCCACAGACCTGTTTTGACTATTTCAATTTTCACATGAAGTCACTAAAATTAAACTACAAAACTATTGATCCTCTTGAAATTTAATTTCATGATGTATAGGAGCAGCTTCAAACTACTATTCATACAAATTTTCGCATCAAATGAGTTCTTGGTTTTGTGATAAATTACGCTTGAATTTCTGAGCCTTTGCGTGGCGCGACATTCACATGACGGGCAAGAGAGCTGTGCACAGTACCGCAAATGATCCGCGACCGCAAATGATGCCCAGACCGGAAATGATCCCCGACGTGGACCGCAAATGATCCCGCCGGAAGGGAACGAATGGCACGGAGTTTCGTCTCCCGGATTTTTTTTAATTTTTGTATTTATATTATTTACTTATGCGCGAATGGAATCAGTCTGCGTGGCTTAATGAAGAGCATCTCATAAATGAGACAGTCAAATTTTCCTCGGCTCTTTTTTAGAATGCGAAATTTGCTTTCTTTAAGGAGGCTTGTCAAAAAATGTTAACCGATTGCGGAATTTTATGTTCAACAATAAATTGAAGTAGGTGTCGAGCTGCGATCGGTAAACAGCGCAATCTTTGTCTCAACACGCAGACTGATTCCATTCGTACAAGGTTCTTAGCTTTGTCTACGAACATTCCATCATCTATTGTCTTCTTAGTATTTAAACATTTTTATCTTTCACTTTTTTGCTTGATAATGACTTTAGCCCGAACGCCGAAACGTCGTCTTAACATTTTTAACTATGCTTTTACGAAATGTTTTCTCGCATTAGCGAGAACTTAAATCTGGTTAACATGGAAAATGCATTCAAATAAAATCTTCACAAGATTTTTGTCTTAGTCATCGTATCATTAGCTGTTATTGTTGTAGATAGAGCTTGTTGAGAAATGGCATTGCTGTCTACAAGCTTTGATTTTTTCCTGTAATTTTCACAAGAATTTTATTTTCACAAGAATTTTATTTAAATTATAATTTACATTGTTGATGAAAATAAATAAATAAATAAATAAATACAAAAATAAAAAAAAAACCCGGGAGACCAAACTCCGTGTCATTCGTTCCTTTCCGGCGGGATCATTTGCGGTCCACATCGGGGATCATTTGCGGTTCGGGATCATTTGAGGTCCAATTTGGCGATCATTCGGTCTGGAGAAAATAGAAGCAGAAGTCGACATTTTACATGTAAAATTCTCATTGTAGCTGAAGAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q641Y2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Rattus norvegicus OX=10116 GN=Ndufs2 PE=1 SV=1
Q91WD5	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Mus musculus OX=10090 GN=Ndufs2 PE=1 SV=1
P17694	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Bos taurus OX=9913 GN=NDUFS2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002323 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00346 all species →	Complex1_49kDa	Respiratory-chain NADH dehydrogenase, 49 Kd subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001135 all species →	Domain	NADH-quinone oxidoreductase, subunit D	Interproscan
IPR022885 all species →	Family	NAD(P)H-quinone oxidoreductase subunit D/H	Interproscan
IPR014029 all species →	Conserved_site	NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site	Interproscan
IPR029014 all species →	Homologous_superfamily	[NiFe]-hydrogenase, large subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11993 all species →	NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016651 all species →	Molecular Function	oxidoreductase activity, acting on NAD(P)H	Interproscan
GO:0048038 all species →	Molecular Function	quinone binding	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0005747 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan
GO:0006120 all species →	Biological Process	mitochondrial electron transport, NADH to ubiquinone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03935	NDUFS2; NADH dehydrogenase (ubiquinone) Fe-S protein 2	EC:7.1.1.2	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.