Gene detail

Detailed information of FUN_028223-T1 in Dendrogyra cylindrus

Genomic Location: contig_68:2404877...2420043
NR annotation: XP_020605857.1, E3 ubiquitin-protein ligase RNF216-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_028223-T1

TTCGTCAACGCCAAATTTTCACGCTCGACAGATCTCGAGCATTTGATTTTAAGAGGTGAAAGAAATGTCTGTGGAGGCGAGGATTTTGGATTCCTTGAGGCCCATATTCCCGCAACTGAATGACCACGTTTTATCCAAGTGCATCAGAGATGTGCAAGAAACCGTGGGAAGCGATCTTGATACGATCACTCGAGAATGCGTCGATTTGCTCTTGAGCGAAAAATATATTAAGCTTAATGAAATCGAAGTGAAGGACAAATTTGTCACCTCGAAGACTCATGTGCGAGAACACTTAAATGTGGTTAATTTTCCGTTTGTAAACGACGACGATGTTGTGTCGACTTACCGAACACCCAAAGTGACTGGGAACCGTAAAATAAACGATACGCCGTCCATCTTGAATACAGCGACACCATCTCCCCGCTCACAAAACACTGGGAAGACAGACATAGTTCCGAGAAGAAATTTACCTTTTGAAAAGACAACTTCCCCCGCGGTTGCTAGATCGCCTACTTCGACCTACCCACCTCAAAAGGTACCAGGTGTAGAAGTTCAACAACAAGAAGCACAAATAAACTTTCGCGCTTTCTTCCCCGATGTGGAAGACAGTTATCTTCAGAGTTTGCTTGATAAGTGGTTCTATATGCCTCTTATTGAGGCCATCAACACAATTTCTAATGAGTTGTTGGATAAAAGAAATTAcccaagaaaatcgtccacttCTACGACTACATCAGCAACGGGCCTGACGAATGTGCCAGCCAGCGAGCTACAGTGCGAGCTTTTGGAGAAAAAAGATAAGCTCGACACTAGAAAATCATCATCTTCGACGACTACCAAGAGCTCCGGCGAAGCCCAAAACGAAAAAGACTACATGAAAGACTTTTCTTGTGTTGTTTCAGGGAAATATAGTGAACAGTGCTATCGGTCTCTTCAAAATGAATTCAGGAACATCCCTGTTAAATACATTAAAATAGCTTTTTCGAAGTTTAAGGGCCACTATGCATCAACCAGGAGTTACTTGCAAGAACAGTTCAGTATATCCAAGGTTTCTGATGCAACTGCCACATCGACTACCACTTCCGCATCTCAAAACGTAACAAGTGCAGAAGTAACCAACTCAAGTAATGACGGCCTTGGTTTTAGTAAGCCACCTAAAATACCTCTCCTAAAGCGTAGGCGTGCTCTAGCGCAGGAGAGAAACAAGAGATTTGCCAACCCTGCCGAAAAGGATACTCCTTGCCACAAACAGCCTCCAGCTGgtTCTAAAAGGCAAGTGCCCAACCAGGACATGCAATCAGTTATTACACCTAAGAAAATGGCACCTCCAGaGTCCTCTAAAAAAGGACAGATCTCTAACACtgtggaaaacaaaaaaaagagagGATTGCCCAAAGGCAGCACTCAGTCAACTGCTCCTGTGAAAGTGGCACGAACAGGAAGGGTTAAAGAAGGCATCCCATGTGATGATGAGCTTGAAGAGCTCTccacccgtattgctgatgactGGATGCAACTTGGGCGTCGGCTGCTAATCAGTAGTGGTTGTCAGGCAAAGCTTGATCAAATTGATCTTAGAATGctgaaattaaatgaaaaggCATATCGCATGTTATTGTGCTGGAAGCAGGAAAACAGCTCAAATGCCACGTACAGCATTTTATCTGATGCTTTATGTCATAAATTTGTAAATCGTCGTGACTTAGctgaaaatatttgttttcacAAAGAGAGCAGGGCTTGAGACCAATACAAGCCACCATAAAAACTAGTAGTAATTAGAGATTAGGGGAGTACGTTCGACCGAAGAGATGGATAGTCAGGTAGTGGCAAAAGAGCAAGATTGTCGGaaatgaggatgagtgagagaggattCCCATCACACAACGCTTTAGAGGAAAGAttgtgtgacgagccaaaagaacatctgtctgcaaaataaattggaatttgtcgcatcaagaaataggttgtgtttttgtcaaaggGGTTTAATTATAAACTGTGAAAAGATGATGAAGTGATCCTTGCGCAAGCCTCACGTAAGCCTTGCGCTatctcaacaaagatttgacgcGATTCTTGCAGAGCCCTGTCAAGTACATCAGTGGAAAAGGAAGGGCTCTGCTTGCAGGGTCACTGAAGAACGTTAGGAACTCGAATTAgttcaacttttgtgctgttattatgtaGCGATTGAGCTCTAACCCAATcattagtttgttttgtcgaGAAACACTTAAGAACATAATTTTTGGAAACTCAGATTACGTCAACTTTGGTGCTGTTATTATGCTAGCTATTGAACTTTTAAGTCAAttgttagtttgttttgttgacgaacAGCAAAGAACACAATTTTTGGAAACTtgg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15413	SP100; nuclear body protein Sp100	-	Transcription factors	ko03000	deepkoala