Detailed information of FUN_028273-T1 in Siderastrea siderea

Genomic Location: contig_28:5029986...5057984
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13517
all species →
FG-GAP_3FG-GAP-like repeatRepeatInterproscan
PF07593
all species →
UnbV_ASPICASPIC and UnbVFamilyInterproscan
PF03098
all species →
An_peroxidaseAnimal haem peroxidaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037120
all species →
Homologous_superfamilyHaem peroxidase domain superfamily, animal typeInterproscan
IPR019791
all species →
FamilyHaem peroxidase, animal-typeInterproscan
IPR028994
all species →
Homologous_superfamilyIntegrin alpha, N-terminalInterproscan
IPR013517
all species →
RepeatFG-GAP repeatInterproscan
IPR011519
all species →
DomainASPIC/UnbVInterproscan
IPR050702
all species →
FamilyPeroxidase Activity and Reactive Species GenerationInterproscan
IPR010255
all species →
Homologous_superfamilyHaem peroxidase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11475
all species →
OXIDASE/PEROXIDASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004601
all species →
Molecular Functionperoxidase activityInterproscan
GO:0006979
all species →
Biological Processresponse to oxidative stressInterproscan
GO:0020037
all species →
Molecular Functionheme bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19511PXDN, VPO1; peroxidaseEC:1.11.1.7
Enzymes with EC numbers-deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_028273-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
11TPM > 0
7Conditions
76.0Max TPM
5.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 4.32 46.45
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 1 1.81 36.28
holobiont · control.pH Control.temp 19 2 7.32 76.02
Whole organism 4 4 32.51 50.08
unannotated 1 1 17.91 17.91
live coral tissue/skeleton 1 1 23.04 23.04

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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