Detailed information of FUN_028343-T1 in Siderastrea siderea

Genomic Location: contig_28:5997104...6006324
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007874 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01170
all species →		UPF0020Putative RNA methylase family UPF0020DomainInterproscan
PF02926
all species →		THUMPTHUMP domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004114
all species →		DomainTHUMP domainInterproscan
IPR029063
all species →		Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR000241
all species →		DomainRibosomal RNA large subunit methyltransferase K/L-like, methyltransferase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14911
all species →		THUMP DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0016423
all species →		Molecular FunctiontRNA (guanine) methyltransferase activityInterproscan
GO:0030488
all species →		Biological ProcesstRNA methylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_028343-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_028343-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
16TPM > 0
7Conditions
194.6Max TPM
7.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 11.06 194.65
holobiont · low.pH Control.temp 20 1 1.96 39.26
holobiont · control.pH_high.temp 20 3 10.27 165.15
holobiont · control.pH Control.temp 19 4 8.09 89.72
Whole organism 4 4 7.00 10.60
unannotated 1 1 7.38 7.38
live coral tissue/skeleton 1 1 4.85 4.85

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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