Detailed information of FUN_028364-T1 in Siderastrea siderea

Genomic Location: contig_28:6307267...6311133
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02900
all species →		LigBCatalytic LigB subunit of aromatic ring-opening dioxygenaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004183
all species →		DomainExtradiol ring-cleavage dioxygenase, class III enzyme, subunit BInterproscan

 PANTHER
No PANTHER signature was detected for FUN_028364-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0006725
all species →		Biological Processobsolete cellular aromatic compound metabolic processInterproscan
GO:0008198
all species →		Molecular Functionferrous iron bindingInterproscan
GO:0016491
all species →		Molecular Functionoxidoreductase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_028364-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_028364-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
13TPM > 0
7Conditions
80.9Max TPM
3.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 0.37 7.47
holobiont · low.pH Control.temp 20 2 7.77 80.90
holobiont · control.pH_high.temp 20 1 0.49 9.82
holobiont · control.pH Control.temp 19 3 5.00 46.10
Whole organism 4 4 3.25 4.97
unannotated 1 1 17.08 17.08
live coral tissue/skeleton 1 1 5.99 5.99

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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