Detailed information of FUN_028389-T1 in Acropora pulchra

Genomic Location: ptg000021l:19237703...19252131
NR annotation: XP_015765386.1, PREDICTED: limbic system-associated membrane protein-like isoform X2 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96RW7Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
Q6WRI0Immunoglobulin superfamily member 10 OS=Homo sapiens OX=9606 GN=IGSF10 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000927 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07686
all species →		V-setImmunoglobulin V-set domainDomainInterproscan
PF07679
all species →		I-setImmunoglobulin I-set domainDomainInterproscan
PF13927
all species →		Ig_3Immunoglobulin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013106
all species →		DomainImmunoglobulin V-set domainInterproscan
IPR036179
all species →		Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR050964
all species →		FamilyStriated Muscle Structural and Regulatory ProteinInterproscan
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR003599
all species →		DomainImmunoglobulin subtypeInterproscan
IPR013098
all species →		DomainImmunoglobulin I-setInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR003598
all species →		DomainImmunoglobulin subtype 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13817
all species →		TITINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_028389-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_028389-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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