Gene detail

Detailed information of FUN_028470-T1 in Acropora pulchra

Genomic Location: ptg000021l:20431665...20454776
NR annotation: XP_029197955.2, unconventional myosin-VIIa-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_028470-T1

ATGCATGGGACTATAGACATAAAGGCGGAAAATTGTCATTACATATTCAATTCCATTTTGATTGTCCTCTATAGCATACGTAAAGCTGGTTATCCAATGCGACACACGTTCAAAGAATTCATTGACCGCTATTACATGTTAAGCGAGGGGCTTGTGCGAAGTCAGCTCGATACTCATGGAATGAAGAATGCTGCGGTCAAAATCGCCCAGAGTCTTCTGGGAAAGTCTGATTGGCAGATTGGAAAAACCAAGATTTTTCTTAAGGATCAACAGGATATTCAGCTGGAGGAAGAAAGAGAGAAATTACTCACCCAGCGCGCCACCTTGATCCAGCGAGTTGTTCGCGGTTTTCTTGTTCGAAAGCAGTACATGAAAATGAAGAAAGGCTGTGTTGTAATTCAGAAAACTTGGAAAGGTTACCTCGAAAGAAAGAAATACGAGAGGATTCGCTTAGGCATCGCTCGTCTCCAGTCCACTTACCGTGCCCGTGTGTTATCCTCAAAGTACATGGCACTGCGCGAACGAATGAAGATTTTCCAAGCTTATTGCCGGGGTTTCCTCGCTCGACAAGAATACAGAACTCGTCTAGAGAGTATTGTGAAAATCCAGTCCGGAATTCGAATGGTGCTGGCTAGAAGACGAACTGAGGAGCTTAGAGCTGAGAAAAGGAAACGTGAAGAAGCTGAGAGGCTCAGAAAACTGGAAGAGGAACGCCTGAAAAAAGCCATGGCGGCCGACGCAGCAAGAAAAGAAGCAGAGAGGCTACATTTGGAACGCATGGCTAAAATTGAGGAAGAAGAGAAGCAAGAACACGAGCGAAAGAAACGAGAAGCGGAGAAAAAGAAACAAGAGATTGAGGTGGCTGAAGCAATGGCCAAGAAACGCAGAGAAGAGGATGTTGATGACTCTAAAATGGTCGATGAAATGTTCGGTTTTCTTCCCGAGGAGAAGGCAGCTCCAGCAGTTGCCTCTGCCCCCACCGCATTCAAGGATTTGGAGCCTGCACCAGATATGGAGTTCAATGCAGAGGAAACTGCTATTGTGTCCTCGGCTCCGGAGCCCGAGGAAGATGTCTCCCAGTTTAGATTTTCCAAGTTTGCTGCTACCTACTTTCAAGGCGGTGCTACTGCTGTGTACATCAGGCGACCGTTAAAACAGTCATTGTTGTCGTTGGCCAGTGAGGCAGATAGCATGGCTGCTCTTGCTGTTTGGATTACAGTTTTGAGATTTATGGGTGATTTGCCTGATCCTAAACTGATTACGTCACAGCCGGATATCAAGGATAGTTCCGTGATGAGCAAAATATACGACACCCTTGGAAGGAAATACAAAGAGAAGGGCAATGAAGGAATGCAGGATTTGGGGGGCTCCAGTAATTCCATGAGTCGAGAAAAAAGAGAGACGCTACGAAAGAAAATCGTGTCGTTGACCTTGAAGAAAAAGTCGAAAATTACCAAGGATGTCTCAGCGAAGTTAAAGGAAGCAGAAGAGAGCGGGACATTCTCGGAAGGATACGGACCTCTCTCTGCTCAAGATCGGCCAACCAGTAATTTAGAAAAACTCCACTTCATCATCGGCCATGGCATATTAAGACCAGACCTCAGAGATGAAATTTATTGCCAGATATGCAAACAGCTTACTCAGAATCCTTCCAAAACAAGCCATGCGCGAGGCTGGATCCTAATGTCCCTTTGTCTGGGTTGTTTTGCGCCATCTGATAAGTTTGTCAAGTACTTGAAGTGTTTTATTGGTGATGGTCCCCCCGGATACGCACCATATTGCGAGGAGAGACTGAGGCGAACCCAACAGAATGGATGTCGGCAGCAGCCTCCCAGTTGGCTCGAGTTGCAGGCAACGAAGTCTAAAAAACCCTTGACTTTACCGATCACATTCATGGACGGAACAACGAAGACCCTCCTGTCGGATTCGGCGACAACAGCTAAGGAACTTTGCAGTCAGCTTGCGGACAAGATTTCACTCACAGACCAGTTTGGCTTCTCTTTGTATATCGCTCTCTTTGACAAGGTCTCCAGTTTGGGCAGCGGAAGCGATCACGTGATGGATGCCATTTCCCAATGTGAACAGTACGCTAAAGAAAAAGGAGCACAAGAAATGAATGCGCCATGGCGACTGTTTTTCAGGAAGGAGATTTTCTCTCCGTGGCATGATCCAGTTCTGGATCAAATAGGAACGAATCTGATTTACCAGCAGGTTGTTAGAGGAATCAAGTTTGGAGAATATCGTTGCGATAAGGACGAAGACCTCGCAGAAATGGCATCCAAACAATATTATGTCGAATATGGAAAGCAGATGATCCCAGATCGCCTCCTGAACCTCATCCCCTCCTACCTCCCCGAGAGTCAGCTCCAGGGGGGAAGACCAGGGCTAGAGAAATGGGCACACCTTATTATTGGCTGTCACAAGAAGGGTTACTACACAATCGATGATATCAGTCCCCAAAAAGTTAAAGAAGACGTGGTCAATTATGCCCGATTTAAATGGCCCCTGCTCTTCTCCCGTTTCTATGAAGCTTATCAGTTCTCAGGTCCTTCTCTGCCAAAAAATGACGTGATTGTAGCGGTGAACTGGACAGGAGTCTATGTCGTTGATGACCAGGAGCACGTGCTATTAGATTTGCAATTCCCAGAGATAACCACCGTTACAAACATAAGGTCAGCGAAGACCGAGAGTTCAAGTTTTACAATCACAACCGTCAAAGGAGATGAGTATACTTTCACATCAGCCAACGCGGACGATATTCAGGAATTGGTGCAGTACTTCCTTGAAGGATTGAGAAAAAGGTCCAAATATGTCGTTGCAATGGTAGACTATCAGAGTCCAGCCGAAAGTTCATCGTTCCTTAGTTTTAAGAAGGGGGACCTGATTGTTCTGGAAAACGATACAGGAGAAACTGTGCAGAACTCTGGCTGGTGTTACGGTATCTGCGAGAGAACGTCAAAGAAAGGCGACTTCCCAGCTGAATGTGGTTATGTGCTTCCAACAATCACTAAACCAACTTCGGACACTTTAAGCTTATTCAGTGATCAATCATTGGCGAGCTCTGAGAAGATCATAGCAACAACACAAACAGCTATTTTGCAAGAAGAAACTGAGGACTTTGAAAAACCTCACACACTCATGGAATATTCCATCGATCACTTCCTGCCGCCTCCTAAGCGAACTCTGAGCAAAGCGCTGTCATCGAGACAAAGAGACAAGAACGCCTTGTGGTCTTTCAGCAAGGATCCAATCAAACAACCTTTGCTAAAGCGATTGTCTGGACAGGAAGAACTTGCCCAGTTGGCTACACAGACATTCCTGTATATCCTTTTTCATGCAGAGTCAGTGACACTTGTTTATGTTTAG

Transcript

FUN_028470-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13402	Unconventional myosin-VIIa OS=Homo sapiens OX=9606 GN=MYO7A PE=1 SV=2
Q17LW0	Myosin-VIIa OS=Aedes aegypti OX=7159 GN=ck PE=3 SV=1
Q9V3Z6	Myosin-VIIa OS=Drosophila melanogaster OX=7227 GN=ck PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000878 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00612 all species →	IQ	IQ calmodulin-binding motif	Motif	Interproscan
PF00784 all species →	MyTH4	MyTH4 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR000048 all species →	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR000857 all species →	Domain	MyTH4 domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR038185 all species →	Homologous_superfamily	MyTH4 domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR051567 all species →	Family	Unconventional Myosin ATPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041793 all species →	Domain	Myosin VII, FERM domain C-lobe, repeat 1	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR001609 all species →	Domain	Myosin head, motor domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22692 all species →	MYOSIN VII, XV	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016459 all species →	Cellular Component	myosin complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_028470-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.