Gene detail

Detailed information of FUN_028547-T1 in Acropora pulchra

Genomic Location: ptg000022l:460074...469607
NR annotation: XP_044172179.1, RING finger and CHY zinc finger domain-containing protein 1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_028547-T1

CTGATTCAAGGGTCCTCGTTTGCATAGTTGGTACCAGTTCTGAACGCGCGTCAGCCATGTTGCATGTTTTGAGACAACGAAGAAAACGAAGTTAGATCAAGATCGATCGCTTCCCTATGTTTTGATCCTTCAACATGTCTTCTACATGTCCGCACTATATAAGACGTTGTGCTTTGCTTGCGCCATGTTGCAACAAATACTACCCATGCAGGTTATGCCATGATGACGTTGAAGATCACAATCTGGACAGAAAGAAAGTACAAGAGATCAAATGTATTCAGTGTCAGAGTTCCCAAGCAACTGCTTCTCACTGTAAAGAATGTGGCATAAAGTTTGGAAGATATTTTTGTGGCATCTGTCGATTATTTGATGACCATGAAAAAGGGCAGTTTCATTGCGATGGCTGTGGTATTTGCAGAATTGGTGGAAAGGACAATTTTTTTCACTGCAACAGATGTGACATGTGTTTGGGAATTCAGCTAAAGGATTCACACAAGTGTGTTGAAAGAAGTTCACGTTCAGATTGCCCAATATGCTATGAGGATATTCACACCTCTAGAATACCAGCGCATGTTCCCCCTTGCGGCCATTTGCTACACAGCACCTGTTTTTCAAAGTATCTAGAGACAGGGGGATATGCTTGTCCAATATGCAACAGATCAATGGTTGACATGACTCGTGCGTGGCGAATGCTTGACAATGAGATATCTATGACTCCAATGCCAGAAGAATACAATAACTTTTATGTCAAGATCCTTTGCCGTGATTGTCACAAGGAAAGCAGGGTCCGATTTCATGTCGTTGGCCTGAAGTGCATGGAATGTGGCTCATACAACACCAGCAGAGAAGGGGAGGAAGGGGTTCCTGTGGCAGCCGTGCCATTACCACAGGCTGCCCATGCACCGCAGGATGAGGAAGAATGGGAAACGGAAGATGAAGAAGAAATAGTCGGGGGACACGAGGAGTCTGAGTCAGAAGAACAAGACGCAGTCGATGATTTAGTTAATTTAGCACAGGTTGAGTTGAATCTTGGCGACGAAACTGACGATAATCAGGTTCTACCTTTAGATTGAGTGGGCAACCCTAGTCCATTATAGAGTGGGTCGTTCCAACTTTTATTGGCACCCCCCCCCCCCCCCCACCCACTTCTCCTCTGTGGAAGGCACTTTTGAAAGGTCCGGGCGGAATCTGGGTTTTCATTTCATTTTAACGTCTGCCTAGAACAGTTCTTACTAGGCCTGACCTGTCGGAATCAGGATTTTGGCGCTTGATTATAACCCTTAGAAAATTGTCTTTCTCCGTTCACCACCTTTCATGGGGGGAGGGAGGGTGTGGATAAAAATTGGAACAACCCAATGCCGGCAGTATGGCTTTCTTGGTTGGTCAGACGTGAGAGGGCGCAGTTTTTTTATTTAAGGGGGATAGGGTGGTGTGGGGCTTACGATATTGGTCTTACTTTAAAAGTCGAAAAGATGTCTCAATGGAAACGTAAAAATAATTATTTAGTTCGTTTACTTGAGACTATATTACAGCCCTGAGACTGATTACTGTCTCCCATTGTCACGGATGGCAAGGATGGAGATGGATTACAACTTGAAAAAGTTGGCCAACTTTTTCAAGTTCTCACTCTGAATTGATAGAGCTTTTGGCCTAGAATCAACCTTAGATAGATCCTTCCGTAAAACATTTCTCGCAGATTTTCTTCTCGTGTTCAATTATTACCCACAAGTAAAAGCTATAGGGAATCGTATTTGTAAAGTCTTGACAAGAAAACAGCCAAAGTACTGTGACATGACCCCTTTAAATAAGAAAACAGGAAATTTTTGCGTATTGATAGAATTCAGTTCCCCTACTGGAAAACCAACATGGTCGGCATGACTCCATGTGAAAACCAAGAATTCGCATTTGCAAATAATTTTGATGGAATATTCGAGCAAAGTGTGAACTTTGTTATTTTTTAGGGTTTTACCGGAATTACTTGACTGTTAACGTAGACGAGGTATTTTTACCACAGTCAATCTACATTGTTCTTGCTTTGTACAAACTCTTCGTCAAATTTGAATTAAAATTATTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CR50	RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus OX=10090 GN=Rchy1 PE=1 SV=1
Q96PM5	RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RCHY1 PE=1 SV=1
Q8VZK0	E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000291 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan
PF14599 all species →	zinc_ribbon_6	Zinc-ribbon	Domain	Interproscan
PF05495 all species →	zf-CHY	CHY zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR017921 all species →	Domain	Zinc finger, CTCHY-type	Interproscan
IPR037274 all species →	Homologous_superfamily	Zinc finger, CHY-type superfamily	Interproscan
IPR037275 all species →	Homologous_superfamily	Zinc finger, CTCHY-type superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR039512 all species →	Domain	RCHY1, zinc-ribbon	Interproscan
IPR008913 all species →	Domain	Zinc finger, CHY-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21319 all species →	RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10144	RCHY1, PIRH2; RING finger and CHY zinc finger domain-containing protein 1	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.