Gene detail

Detailed information of FUN_028561-T1 in Acropora pulchra

Genomic Location: ptg000022l:705481...709426
NR annotation: XP_044172191.1, 39S ribosomal protein L46, mitochondrial-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_028561-T1

TTCAAAATGGCGGCGAGTGGAGCTCGTTTTATGGAAAAGTTACCAGTGTTTGTCCGTGGTCTATATGGCACAACTGCAAGGAGAACAGCCTTGTTTGCTGTTTGCGCTCATTGGAGAAATTACAGCTCAGTGCAGCCACATGCAAAAGGTTCAAGGATATTTAGTGCTGTGTGCATTCAACGTTTGCCTATTATAACAAAAACAAAAACAGACTTAGAAAGAGCTTATGAAGAACTTCAAGAGAAATTAGAGTGGGAGCATAGTGCTTTGTCAGAAGATGAAGTGCAGTGGGACACAATAATGCAGAGAAAGGAAAAGATTAAAGATGAGGATAACGAGGAGAGTCTTGCGATAGGAGCATTTGAATCAGAGAGAAAGGAATTTGAAGAAGAACAGGAGGAAGAATGGAAAACATTCGTACCAGCGCCAAGGAACACAGAGGCAGATGAACTCAATGATCTGAAATCATTACAACGCAAACTTCAAGAAACTCTTGTGTTGTTGGTAAAGAAGGAGAAAGATTCACCCAGCTGGGAGCCACCTCTTGCAGAAGTCATGTTCGACACAAATGAAACACTACAACAGGTTGCATCCAGGGGTTTATGTCAAACTTGTGGCACAGAATTGCATGTTCAATTTCTAAGCAATGCACCCATTGCTGTCATGAAGAACCATAACAACAAATCCAACAAGGTATTTTTCTACAAAGTGAATTATTTAACGGGACGCGTGAGCTTAAGTGAAGACTACTGTGATCATGTGTGGGTTACAAAAGAAGAAATGGAGGATTTGGTTGACCCAGAATACTACAAGTCCTTAAAGAGATTCCTCTCTTGAGATGTAATTTTCTAATTTCTGTCTTCGCTGTCAAGATTCGCTTTGTTATGTCAGACATACGTCGAATAGCTTCGCCGGCAGGGAATTCAGCCAAGGAGGGGTTCGTAGCGATTGCACCGCGCACTCCCTAAAAAAACGATTCCATGACAAATGTTTTATTTATTGGTACAAAGAACATTGTAAGGACCATGATACTTTATTTTAGCTGTACTCTCTGAGGAGTGTTAAAACTATTAGACGTAGTGTCCGAAGATCATTGTAAAGTATCTTGAGAAATCATCCTCAAGTTCGATTTATTTCTGTAAAGTACAAGGACGAGTGCCAAACTTTTCAAATTATGACGTACGTCAACGACGACAATTGAGACTGCAAAGAGTAATATTTGGAAGCTCTCGCAACCCCGATGTCGACTCGACATCGAGAACGTCAACTGAAAATGTAACTTCACGTTTCCTCTATCATTTCTAAGTTATTCAAAGTCATTATTCTTGCAAAATGTGTTCTAATTATACTGGAATTAAATTAGAAGCAGCTTTTGAGAGTTAAGAAGACAAAATTGAACATTGGTCATCATATGCTCACGTCGTCCACACAACTGCAAAACAGGTGATTTCACGTCGTGGAAAGAACGAGAACGTCTGCCAGATGTCAAAAAATGAAAAATGCACGTGCAAAACGTGCAAAACTATTGTTTTTCATTGCAAATATGCTATTAGATGATGTTTTTTTTGCTGTCGTTGTCGTGGTTGCTTAAGCTCCCTAATTTGATTGGTTGAACGAGGAAAGATGAGCGTGCCGCACGCGCGGCATGCACTTAAGAGCAACTTCGTGTAATCCTCGGTGAAAAACAAAAAAACAAGACAAAACCTGAAATTCCTATAATTGCGCCTTTGACGACAACTTGAGCAGACAACAATAACACGCAATTTTCTATGTTCATACCAACGGCCCTCCTTGCGGCCTAGTTGTAGCGTACTTCGCCAACATTGGATAACTTGAACAAGATGGAATCATCCCAAAATAATCTCACGTGGAAATGTTTATCATCAAGTGACTTTTCCTCCGCGTTGCCGTTGCCCTCACTAAAACCCCCTACTAGGACCCGGCACAATTTTCGCATATTTACGCGTTCTTATGTTATTTGTGCGACTTTAATGGCTGCCTTGTGAAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EQI8	Large ribosomal subunit protein mL46 OS=Mus musculus OX=10090 GN=Mrpl46 PE=1 SV=1
Q5RK00	Large ribosomal subunit protein mL46 OS=Rattus norvegicus OX=10116 GN=Mrpl46 PE=2 SV=1
Q7S1Z3	Large ribosomal subunit protein mL46 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mrpl17 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003482 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11788 all species →	MRP-L46	39S mitochondrial ribosomal protein L46	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040008 all species →	Family	Large ribosomal subunit protein mL46	Interproscan
IPR021757 all species →	Domain	Large ribosomal subunit protein mL46, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13124 all species →	39S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17427	MRPL46; large subunit ribosomal protein L46	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.