Detailed information of FUN_028649-T1 in Siderastrea siderea

Genomic Location: contig_29:1406139...1426079
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_028649-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR024111
all species →		FamilyPEX5/PEX5LInterproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10130
all species →		PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005052
all species →		Molecular Functionperoxisome matrix targeting signal-1 bindingInterproscan
GO:0005778
all species →		Cellular Componentperoxisomal membraneInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0016560
all species →		Biological Processprotein import into peroxisome matrix, dockingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13342PEX5, PXR1; peroxin-5-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_028649-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
13TPM > 0
7Conditions
39.5Max TPM
3.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 1.27 15.83
holobiont · low.pH Control.temp 20 2 1.28 20.11
holobiont · control.pH_high.temp 20 2 1.17 13.81
holobiont · control.pH Control.temp 19 1 0.51 9.70
Whole organism 4 4 36.87 39.46
unannotated 1 1 21.79 21.79
live coral tissue/skeleton 1 1 33.09 33.09

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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