Detailed information of FUN_028650-T1 in Siderastrea siderea

Genomic Location: contig_29:1435860...1441865
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00173
all species →		Cyt-b5Cytochrome b5-like Heme/Steroid binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036400
all species →		Homologous_superfamilyCytochrome b5-like heme/steroid binding domain superfamilyInterproscan
IPR052320
all species →		FamilyCytochrome b5 domain-containingInterproscan
IPR001199
all species →		DomainCytochrome b5-like heme/steroid binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21281
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_028650-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_028650-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_028650-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
10TPM > 0
7Conditions
146.9Max TPM
6.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 11.12 117.59
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 1 7.35 146.93
holobiont · control.pH Control.temp 19 1 0.67 12.80
Whole organism 4 4 21.08 24.43
unannotated 1 1 26.49 26.49
live coral tissue/skeleton 1 1 30.57 30.57

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP