Detailed information of FUN_028711-T1 in Siderastrea siderea

Genomic Location: contig_29:2272109...2281298
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_028711-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR008983
all species →		Homologous_superfamilyTumour necrosis factor-like domain superfamilyInterproscan
IPR052136
all species →		FamilyAdipolin/Erythroferrone-relatedInterproscan
IPR001073
all species →		DomainC1q domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24019
all species →		ADIPOLINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005179
all species →		Molecular Functionhormone activityInterproscan
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K21410C1QTNF12, FAM132A; adipolin-Domain-containing proteins not elsewhere classifiedko04990deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_028711-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
12TPM > 0
7Conditions
171.6Max TPM
6.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 3 15.55 171.60
holobiont · low.pH Control.temp 20 1 1.31 26.21
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 2 10.51 103.75
Whole organism 4 4 2.70 3.70
unannotated 1 1 2.17 2.17
live coral tissue/skeleton 1 1 3.70 3.70

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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