Genomic Location: contig_29:2329146...2358498
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families
| CDS |
| FUN_028713-T1 |
| Transcript |
| FUN_028713-T1 |
| Protein |
| FUN_028713-T1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00454 all species → | PI3_PI4_kinase | Phosphatidylinositol 3- and 4-kinase | Family | Interproscan |
| PF02192 all species → | PI3K_p85B | PI3-kinase family, p85-binding domain | Family | Interproscan |
| PF00613 all species → | PI3Ka | Phosphoinositide 3-kinase family, accessory domain (PIK domain) | Repeat | Interproscan |
| PF00792 all species → | PI3K_C2 | Phosphoinositide 3-kinase C2 | Domain | Interproscan |
| PF00794 all species → | PI3K_rbd | PI3-kinase family, ras-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000403 all species → | Domain | Phosphatidylinositol 3-/4-kinase, catalytic domain | Interproscan |
| IPR018936 all species → | Conserved_site | Phosphatidylinositol 3/4-kinase, conserved site | Interproscan |
| IPR003113 all species → | Domain | Phosphatidylinositol 3-kinase, adaptor-binding domain | Interproscan |
| IPR029071 all species → | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR000341 all species → | Domain | Phosphatidylinositol 3-kinase Ras-binding (PI3K RBD) domain | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR001263 all species → | Domain | Phosphoinositide 3-kinase, accessory (PIK) domain | Interproscan |
| IPR011009 all species → | Homologous_superfamily | Protein kinase-like domain superfamily | Interproscan |
| IPR035892 all species → | Homologous_superfamily | C2 domain superfamily | Interproscan |
| IPR042236 all species → | Homologous_superfamily | Phosphoinositide 3-kinase, accessory (PIK) domain superfamily | Interproscan |
| IPR015433 all species → | Family | Phosphatidylinositol kinase | Interproscan |
| IPR002420 all species → | Domain | C2 phosphatidylinositol 3-kinase-type domain | Interproscan |
| IPR036940 all species → | Homologous_superfamily | Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10048 all species → | PHOSPHATIDYLINOSITOL KINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016301 all species → | Molecular Function | kinase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0005942 all species → | Cellular Component | phosphatidylinositol 3-kinase complex | Interproscan |
| GO:0014065 all species → | Biological Process | obsolete phosphatidylinositol 3-kinase signaling | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0016303 all species → | Molecular Function | 1-phosphatidylinositol-3-kinase activity | Interproscan |
| GO:0016477 all species → | Biological Process | cell migration | Interproscan |
| GO:0035005 all species → | Molecular Function | 1-phosphatidylinositol-4-phosphate 3-kinase activity | Interproscan |
| GO:0036092 all species → | Biological Process | phosphatidylinositol-3-phosphate biosynthetic process | Interproscan |
| GO:0046854 all species → | Biological Process | phosphatidylinositol phosphate biosynthetic process | Interproscan |
| GO:0048015 all species → | Biological Process | phosphatidylinositol-mediated signaling | Interproscan |
| GO:0052742 all species → | Molecular Function | phosphatidylinositol kinase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00922 | PIK3CA_B_D; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta | EC:2.7.1.153 | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of FUN_028713-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| holobiont · low.pH_high.temp | 20 | 3 | 7.86 | 67.05 | |
| holobiont · low.pH Control.temp | 20 | 1 | 0.80 | 15.93 | |
| holobiont · control.pH_high.temp | 20 | 0 | 0.00 | 0.00 | |
| holobiont · control.pH Control.temp | 19 | 2 | 13.04 | 128.22 | |
| Whole organism | 4 | 4 | 40.20 | 47.45 | |
| unannotated | 1 | 1 | 45.35 | 45.35 | |
| live coral tissue/skeleton | 1 | 1 | 35.43 | 35.43 |
Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM,
StringTie quantification over 85 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
