Gene detail

Detailed information of FUN_028811-T2 in Dendrogyra cylindrus

Genomic Location: contig_71:1335999...1414776
NR annotation: XP_020615103.1, putative leucine-rich repeat-containing protein DDB_G0281931 [Orbicella faveolata]
Species abbreviation DCYLI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_028811-T2

ATGCTCGTTCTGAAGTGGAAAAAATTACTTCGCTCTCTTATTTCTTTAAAGTTTGGTTTTTGCCAATGTTTCTGTCCAATTTCTTACAGGCGTTTAGATTACAATAATCTCACAACAGTAGCTGATGGAACATTCAGGCATTTCAGTAGCCTCCAACGTTTatATTTCAATTTCAACAATTTAACATCGGTCCCGGATTTAACTGGTGTCAGCAGGCTGAATTATTTAGCATTTAATTTTAACCAAATCAAGAGTATGTCAAAGCTCGTGAATTGCAAGATCAAAGCGGTAGACCAAATAGATTTGAGCCACAACCAGATAGAACAGTTACCAGTCAGTGTCTTTCAGAACATGCATGTGCCTATGAGTTTGATAATGTTCTTCAACAAGCTTAAGTCCATACCAGATGGAGCGTTTTCTGGTTGCAAAAATTTACTTCAGTTGATGATAAATTTTAATTTCATCTCACAAATCAGCAATCGCACCTTTGCAGGGCTTAAGAATCTACGGACACTAACGATGATAAACAACAGCCTGGCCTTCATTCCTGAAAACGCTTTTGCTGACTCGCCATTACTACAACTTTTGCTTCTCAATGGCAACGCAATCAAATATATTGATGGTAACGCCTTCCGTGGTCTTAAAAGCCTTGAAAGATTGACACTATTTGACAATCCTCTAGGATTACTACCGGTAAAGATGTTTGACGAAATGACGTCCAATGTTACAATGAGTATTTCGTGTAAAAATCTACAGACGCTTACGCCAGGGTCATATACTGCTACTATTGTATGTGCTCCGTCAACCTACCATGTAATCCTTTACGATGGACAAAGTGATCAGTCGATGGTTTTTCAAAATTCAGGCTTCGAATGCACTGAATGCCGAACAATTATCAGACCCCATTACAATTGCTCTAACTGCAGCTTTTGCATGACTGGTACCTATAGCAGCCGTCAAGCCGTGTGTCAAGAATGTCCTGCAGGAGGTTTTTATCAAGACGAAATGGGGAAAATTGAATGTAAGAAGTGCAGCACGGGAACATACGTTCCAGAAAAGGATCATCCTGGAAAAAGTGCAACCGACTGTCGCGCATGTCCGTACGGTACCCAAACTAATGAGACTGCTGGTTATCGTGCATGCAGATGCCTTAATAATTTCTACCGCCTTGACCGATTTGGTCCGTGCACAGCATGTCCAGATCATGGCCTAGACTGCAAAAACGATACAGCAATCCTGGCACCAAATTATTTCTGGAGGTGGAGCAACCAAACGAAGGAACATTACACGAAATTTATTGAAAACATTCACACCTTTGGACCTAAATACAACACGAACTTCTCCACATTTCAAGGACCATTGCCAAAGCCACTGAAATGTCCTTATCAAGGGTCATGTAACGGTGGAATAAGCTCATCGTGTAAAAAGGGCTTCCAAGACACTCTATGTGCCACTTGCTCTTATAACCACTATCTCCGATTTAACAGCTGTCTTGAATGTCCAAGAATGGTTGTTACCATCATTTCATGTGTTGTGGTAATTCTGGTCTTTGTATTGTTGTTTGTGATGGTTCTCTGGGGTGACTCGAGACGGACAGAAAACGATCGTACCCGTACTGTTGCAGATGTCATCATGTCTTGCGCCAAGATCGTCATTGGCTTTTATCAAGTCGTTGCTGGCATTTTTGCAGCATTGGTGAGTGTCCAGTGGCCTGTAATCCTTATTTCCATGGAAAAATATCTGAAGTTCGTGGAAGGAAACATTTTACAATTTGCACCACTGAGCTGCATTCATCCTCTGCTTCGACTAGACCCATTCTTACAATTTGTTTTAGCCATTGGCATTAACATCTTGGTCGTTTTTCTCATACTGCTCTATCTTTCCCTAAAGAAACGGCACATCAACAAGATGGAGATACTTCAGagcgagaaaataaagaaaatttcgAGCTTGAAGAAGTCGTGCTATCGAAACATATTCTTATTTCTTCTTTTGTCATATCCAATGACAAGTAAGAAGATTATTGACATTCTGCCTCTGCCTGGCGTTTGTGTGGACTTGTGCTTCACCAAAGATAGAAACGAATGTGTTTCCCTCCTGAAGGCTGATTACTCCATCCACTGTCTCACCGCTCGTCACAATATCTTTTGGCACATAGCAGCTGCGTTTGCACTGTATCCTGTGTTCTTTCCTTTGCTGCTACTGATTCCCATCTACAAGTACCGAGAGGCTAACCCTGATGAGAAAGAAATTGCTTTTGGCCTCAGagtgttttttgaaaattataaaGAGAAATATTGGTTTTGGGAGATTGTCGAGATGTATCGGAAACTGATGcttatttcttttattctgCTGTTTAACTCCGAAAGCCGTTCACAAATTGGCTTTGCTGTGATCGCAGCCAGTGCATCAGGAGTTGCGTACACCATCTTCCGACCGATAAAAGGGAAATTTGAAGATCGACTCCAAACGTTTGTTCTTTGGATAATATTTTTCAACGTTTGTCTTGGTGCAATATATTCACAGCCCGACGTCAGCAAGAGTCAAGGAGAAAACAACTCCACCTTCATCAATGTAATGTTCGTGGTTATCAACAGTGCCGTGCTGATATTGACCCTGGGAAAAGGCTTGCTTTATGTGAGGTCTAACTGGAGAGCACTATCATCTTGCCCGATGAGATGTTTTCACCTGATTTGTCGAGGATGTGAAGACCGCCACAGGGGAAGAAATTACTCGCTTATCAGTACAACACAGTAA

Transcript

FUN_028811-T2

AACGGGGGAGTCATCCTCCTCTCGCACCCACCCCCACCGCCTTGCACCGCGGTTGGGTGTACGGCCGAAGGTTAAAATCATATGTTTAGTTCCCACTGCTTTTGAAACACGAGCATAtaataaatgtttttttgtttgtttgtttgttttttatggcGGACATTTGGGGTTTTGTCTTGGGTTTtcgcaattgcattttttagcctgTAACGAAAATTTCcaggctacaacgggatttgCACCAATTTCATGATAAGATCAATCAGGCAGTAGAAGTTAAGTCACCTAAATTATTTAAGGAAACATAACCTTATAACCCATAATGATAAATTATCAATTTAATGACCAAAGTGTCTTAAATCTTCTAGGTCTAGTTGTTTGAATTCCATGTCTCGTAATGCTCGTTCTGAAGTGGAAAAAATTACTTCGCTCTCTTATTTCTTTAAAGTTTGGTTTTTGCCAATGTTTCTGTCCAATTTCTTACAGGCGTTTAGATTACAATAATCTCACAACAGTAGCTGATGGAACATTCAGGCATTTCAGTAGCCTCCAACGTTTatATTTCAATTTCAACAATTTAACATCGGTCCCGGATTTAACTGGTGTCAGCAGGCTGAATTATTTAGCATTTAATTTTAACCAAATCAAGAGTATGTCAAAGCTCGTGAATTGCAAGATCAAAGCGGTAGACCAAATAGATTTGAGCCACAACCAGATAGAACAGTTACCAGTCAGTGTCTTTCAGAACATGCATGTGCCTATGAGTTTGATAATGTTCTTCAACAAGCTTAAGTCCATACCAGATGGAGCGTTTTCTGGTTGCAAAAATTTACTTCAGTTGATGATAAATTTTAATTTCATCTCACAAATCAGCAATCGCACCTTTGCAGGGCTTAAGAATCTACGGACACTAACGATGATAAACAACAGCCTGGCCTTCATTCCTGAAAACGCTTTTGCTGACTCGCCATTACTACAACTTTTGCTTCTCAATGGCAACGCAATCAAATATATTGATGGTAACGCCTTCCGTGGTCTTAAAAGCCTTGAAAGATTGACACTATTTGACAATCCTCTAGGATTACTACCGGTAAAGATGTTTGACGAAATGACGTCCAATGTTACAATGAGTATTTCGTGTAAAAATCTACAGACGCTTACGCCAGGGTCATATACTGCTACTATTGTATGTGCTCCGTCAACCTACCATGTAATCCTTTACGATGGACAAAGTGATCAGTCGATGGTTTTTCAAAATTCAGGCTTCGAATGCACTGAATGCCGAACAATTATCAGACCCCATTACAATTGCTCTAACTGCAGCTTTTGCATGACTGGTACCTATAGCAGCCGTCAAGCCGTGTGTCAAGAATGTCCTGCAGGAGGTTTTTATCAAGACGAAATGGGGAAAATTGAATGTAAGAAGTGCAGCACGGGAACATACGTTCCAGAAAAGGATCATCCTGGAAAAAGTGCAACCGACTGTCGCGCATGTCCGTACGGTACCCAAACTAATGAGACTGCTGGTTATCGTGCATGCAGATGCCTTAATAATTTCTACCGCCTTGACCGATTTGGTCCGTGCACAGCATGTCCAGATCATGGCCTAGACTGCAAAAACGATACAGCAATCCTGGCACCAAATTATTTCTGGAGGTGGAGCAACCAAACGAAGGAACATTACACGAAATTTATTGAAAACATTCACACCTTTGGACCTAAATACAACACGAACTTCTCCACATTTCAAGGACCATTGCCAAAGCCACTGAAATGTCCTTATCAAGGGTCATGTAACGGTGGAATAAGCTCATCGTGTAAAAAGGGCTTCCAAGACACTCTATGTGCCACTTGCTCTTATAACCACTATCTCCGATTTAACAGCTGTCTTGAATGTCCAAGAATGGTTGTTACCATCATTTCATGTGTTGTGGTAATTCTGGTCTTTGTATTGTTGTTTGTGATGGTTCTCTGGGGTGACTCGAGACGGACAGAAAACGATCGTACCCGTACTGTTGCAGATGTCATCATGTCTTGCGCCAAGATCGTCATTGGCTTTTATCAAGTCGTTGCTGGCATTTTTGCAGCATTGGTGAGTGTCCAGTGGCCTGTAATCCTTATTTCCATGGAAAAATATCTGAAGTTCGTGGAAGGAAACATTTTACAATTTGCACCACTGAGCTGCATTCATCCTCTGCTTCGACTAGACCCATTCTTACAATTTGTTTTAGCCATTGGCATTAACATCTTGGTCGTTTTTCTCATACTGCTCTATCTTTCCCTAAAGAAACGGCACATCAACAAGATGGAGATACTTCAGagcgagaaaataaagaaaatttcgAGCTTGAAGAAGTCGTGCTATCGAAACATATTCTTATTTCTTCTTTTGTCATATCCAATGACAAGTAAGAAGATTATTGACATTCTGCCTCTGCCTGGCGTTTGTGTGGACTTGTGCTTCACCAAAGATAGAAACGAATGTGTTTCCCTCCTGAAGGCTGATTACTCCATCCACTGTCTCACCGCTCGTCACAATATCTTTTGGCACATAGCAGCTGCGTTTGCACTGTATCCTGTGTTCTTTCCTTTGCTGCTACTGATTCCCATCTACAAGTACCGAGAGGCTAACCCTGATGAGAAAGAAATTGCTTTTGGCCTCAGagtgttttttgaaaattataaaGAGAAATATTGGTTTTGGGAGATTGTCGAGATGTATCGGAAACTGATGcttatttcttttattctgCTGTTTAACTCCGAAAGCCGTTCACAAATTGGCTTTGCTGTGATCGCAGCCAGTGCATCAGGAGTTGCGTACACCATCTTCCGACCGATAAAAGGGAAATTTGAAGATCGACTCCAAACGTTTGTTCTTTGGATAATATTTTTCAACGTTTGTCTTGGTGCAATATATTCACAGCCCGACGTCAGCAAGAGTCAAGGAGAAAACAACTCCACCTTCATCAATGTAATGTTCGTGGTTATCAACAGTGCCGTGCTGATATTGACCCTGGGAAAAGGCTTGCTTTATGTGAGGTCTAACTGGAGAGCACTATCATCTTGCCCGATGAGATGTTTTCACCTGATTTGTCGAGGATGTGAAGACCGCCACAGGGGAAGAAATTACTCGCTTATCAGTACAACACAGTAATAACTGTCTTTTAAGGACTAAAAACCGATATTGCTGTTCATGAAATGAAAAAAGGACTTTAGTTTATTAGAAAATGTAGCCGCGCGCTCCACCAAAAACaagcagatatgtccaggagtGAACGCTAATGAGACGCACCTTCCTCATGATAGctatcacaaagtgtcctcattaatagaagttcaccaaaacacacccaATTCTGTCAATATGAAAATATTatgaaaatgtcaaataacccagtcaaacatgaagtacttattaaacaatacttttgttcaatcctggacataagtgaagaCAGGATTTCATTTTCAATATTAATTTACGCATTGTTGCATTAGTCAATAAATTTTAAGGAATAATGGATTATTTAAACCAAAAGTCATTTTCCTTCGATTTGATTTGCTTTAGCACTATAATTTCAATGCAAAGTTTTGAGATTTGAAATTTTTGAAATCTCGATAACTTAAAACTCACGAAAAACTCAACCATTGTTCTCCTTCCGGTGTGAAATATAGATTTTACCCTCGAAATTTTGAAACCGTTTAGCACCGATTTCAGGTACAATTGCAGGCCTTAATGCAAGTTACTAAACTTTTGCGCACATTTTGAATTGCATTGGACACACAGCTTAAATCTCTTGAATAAAGCGTTTCGTTTTGAGGCGTACGAATGCAATGCTGCATCGATTAAGTCTCTGAAACGGCAACAGGGTATTTAGACTCCCTAGtacctgtcttgttttattgATGCTTGTTTATAGTAAGTATTGTTTTATATTCTTgtatttcgcgatttttttcgTATATTTTTAGTTTCCCGTTTCGCTTGTCGTTTTTGGACCCCCGAGGCCAGTATATTCAGGCTTGTTCGGTTATGCCGCGGTCCAGGcacaaaaatcaaataaaaaaatttaaaacttgtaataacacacacaaaaaaaaaacaaatatatcAATACAATAAGTTGGGCATCGCTGTTTAGGAATAGGGGTCCTACtgtaactcaacaatgcactcggacactcgctattaaaaataaagaaaaatctagcgtaaaaattatttccaaTTATTGTTTTGGCTACTGGATTCAAAGGTTAATGTTCATTAACCATAACTAGCACATGTCTTTTGTATTTACTAGCCGTACGATCATAACTGTAAATACGCGTATAACTGTACATACAACCTGCTGTAGTGCACCTGTAAGTTTTTAAATGGAAGCTTTTTAAGTTTGTTTATGTTTTCAAAAATGGCGTTTTTCCATTTGATGTGTATCGCGTTACTAGCTCGCTCTTAATTGGAGCTACACTGTAACAAAATATTCTTTGCTTATTGTTTGGGttaagattaaagtctacgCTGGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000105 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07699 all species →	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF13306 all species →	LRR_5	BspA type Leucine rich repeat region (6 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011641 all species →	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR026906 all species →	Repeat	BspA-type LRR region	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR050541 all species →	Family	Leucine-rich repeat and transmembrane domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24369 all species →	ANTIGEN BSP, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_028811-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.