Detailed information of FUN_028897-T1 in Siderastrea siderea

Genomic Location: contig_29:5294916...5295647
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000436 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for FUN_028897-T1 in Siderastrea siderea.
 InterPro
No InterPro signature was recorded for FUN_028897-T1 in Siderastrea siderea.
 PANTHER
PANTHER termDescriptionSource
PTHR37962
all species →		MALE STERILE (3) 76CAInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for FUN_028897-T1 in Siderastrea siderea.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_028897-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_028897-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
78TPM > 0
7Conditions
481.6Max TPM
124.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 18 194.67 481.56
holobiont · low.pH Control.temp 20 19 120.62 367.56
holobiont · control.pH_high.temp 20 18 122.48 321.28
holobiont · control.pH Control.temp 19 17 95.10 309.21
Whole organism 4 4 2.44 4.42
unannotated 1 1 2.07 2.07
live coral tissue/skeleton 1 1 1.10 1.10

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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