Detailed information of FUN_028977-T1 in Siderastrea siderea

Genomic Location: contig_29:6751384...6758873
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03098
all species →		An_peroxidaseAnimal haem peroxidaseDomainInterproscan
PF13330
all species →		Mucin2_WxxWMucin-2 protein WxxW repeating regionFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050702
all species →		FamilyPeroxidase Activity and Reactive Species GenerationInterproscan
IPR019791
all species →		FamilyHaem peroxidase, animal-typeInterproscan
IPR025155
all species →		DomainWxxW domainInterproscan
IPR037120
all species →		Homologous_superfamilyHaem peroxidase domain superfamily, animal typeInterproscan
IPR010255
all species →		Homologous_superfamilyHaem peroxidase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11475
all species →		OXIDASE/PEROXIDASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004601
all species →		Molecular Functionperoxidase activityInterproscan
GO:0006979
all species →		Biological Processresponse to oxidative stressInterproscan
GO:0020037
all species →		Molecular Functionheme bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_028977-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_028977-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
10.0Max TPM
0.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 7.34 10.01
unannotated 1 1 5.65 5.65
live coral tissue/skeleton 1 1 3.59 3.59

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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