Gene detail

Detailed information of FUN_028983-T2 in Acropora pulchra

Genomic Location: ptg000022l:6770834...6777325
NR annotation: XP_029185741.2, 26S proteasome non-ATPase regulatory subunit 6-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_028983-T2

CTTCGAAACCATCTCATTATTTCAAATTGCTACAAAATGCCGGTTGAAAATCTCGAAGAAGAAGGTCTACCAAAAAATCCTAACCTTGAGCTAGCAGCCTGGCGTTTTACTCTTAATAATCCAGAAGGAAAAGATAAAGAAGATGCGAAGAAAAAGCTTTTGGAAGCCATCAAAGAAAATGATATGGCTCCACTTTATGAAGAGGTCTGTGCGGAACTCAAGTGGCCGATAGACAAAGCTCTGTTGGCAAAAATGCAATCAAAAAACCAGGAAAAGCTTGAAAAGCTTGATGAAACACTGAAAGATACTGAAGAAAATTTAGGAGAGACTGAAGTTAGAGATGCTCTCTACGATAAAGCGGAGTATCTGTGCAAGATTGGGGAGAAGGAGAAGGCTCTAACTGTTTTTCGCCTTGCATACGACAAAGCAGTTGCACTGGGCTATAAACTGGATATTGTTTTCTATCAAATTCGCATTGGGTTGTTCTATCTGGACAATGATTTGATCACACGGAATATCGATAAGGCCAAAACCTTAATTGAAGAAGGTGGTGATTGGGATCGACGTAACAGACTCAAAGTATATCAAGGTTTGTACTATCTATCCATCCGCGACTTCAAATCGGCAGCAAATAATTTCTTGGATAGCATATCAACATTTACATCATACGAGTTGATGGACTACAAGACATTTGTGACATATACAGTTCTGGCAAGCATGATAGCCCTGGAACGTGTGGATCTCAGAACAAAGGTTGTAAATGGTGCTGAAATTCTCGAAGTTCTTCATCAACTGCCAACTGCCAGTCAATTCCTGCTGTCGTTTTACAACTGTCATTACTCTGAATTCTTTGTTGCGTTAGCGAAGGTAGAAGGAATTCTCAAGCAGGACCGGCTATTGGCTCCACATTGTCGTTACTATGTCAGAGAGATGCGAATTCACGCCTACACACAACTGCTAGAGTCATACCGCAGTCTTACGCTTCAGTACATGGCTAATGCCTTTGGTGTCAGCGAGGAATTTATTGACAAGGAACTTTCGCGGTTCATATCAGCTGGACGATTGAATTGCAAAATTGACAAAGTCGGTGGTGTTGTAGAAACTAACAGGCCTGACCACAAGAACTGGCAGTACCAAGTATGTAGTTTGTCAAGTACTTTATTACCATTTTTATTTCTACGTTCTCTCAAAGAGCTCATTGAACAGCAAACCGTTGAATAAGACAATAAAAATTATACCATATTTACCCGTGTATAAGTCATCCTTTTACAGCCTAAAAATCAGTCCAAAAACCGCCCTCGACCTATACATGGGTCAAAAACTGAGATCAAAAAAAGTTTGGACAATTTTTTTCTGTAACCATAGTGTACCTGAAAGAAAATTCTAACCCAGAAAAAAGAAAGACTTATTTTTTGGCTCCAAAATGGGGGTCCACTTATACACGAGTAAATACGGTACAATAGTCATTTGCATGGTGGAGAATTTTGATGCAACAATGCCCTTTTATAGTAAGATCTCTTTGGTTGTCATCTTGTTGCTTTTCGCTACATAACTGGCAAAATTTAACACATGAACTATCGACTGCAAACACCTTTGAACTGAACTGAACATCGCTACCCCACACACCAGATCTTTTTGTACTTAAGCCTACACACGTATGTAGCTGTTAAGTACTTTCTGTATTAAAACAGCTGCCCTTTTGAAGTGTATGATGCAAAATTTTTTCAGTTGCCTTAATTAAGTGTAACTAACAGTTTGAGAATTAAAAATCATTGAAAATATAAGTTAAGTTAAGTGCTTTGTGTTGTCTTAAGTGTGTGTTTTCGTCCCCAAAAAGTCTCATCTTTAGATGAAATTGGCATATTTTGAGTTTGAAAAAAATACAAGTTTTAATCTCAAATCTGTTTATTCCACTTACCAAACAAGCCATAAGCAAAATAAAAATTGTCGTACCATTTACACTATTTACCTTTGTCTTGTTTTAGGCCACCATAAAACAGGGCGATCTTCTTCTCAACAGAATCCAGAAGCTCAGTCGTGTTATAAATGTGTAACAAAACGTTTAGCATTAAGGATGATTCTTTGTGAGGTTCCAGTCATTTGTCAAGCTACTCAGGCAAAACAATGGCAACAACGCATTTGAAAATAAAGTCATTTTCTCTCAAGTTGTCTGCTTTATTACACAATCATTTCTAAAATTAATTTTGCAATGGCAAACCACTCATTTAATCCCACTTCTGCACTTTTGAAACAAGCAGTAAAGTAGAATAACTATGTTTTAAAAATTGGTACACAGTCTAAAGTTAAGTGCAAAACATGACTGAATTTGAGTGATCAGTTTACAGAGGAAATGAGGAGGTTTGCCTACAAAGAAAATTAATTTTAGTACATGGGAAAGTGAATTAGAAATTCAAGCTAGATGAGAAATGTAAAAAAAAGTAACAGAAAAGGAAGGACAATTGTTAGGAATTGCTTTTATGAAGAGGTAATGTTGAAAGAATAACTTTTTGGTCTTTCTACACTGAAAATTCAACCTCTGTCAGCTTGTTTGATGCAACCTAATTTGATATACTACTGTGATAAAATAACACTTGATTTCAAAATGCAATTCTCAGTTGCTATCCCTTCCATCTAGTCCACTGAAAAAGAGACATTTTATAACTCAGCGAAGTTTTATGGAAAGATAACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99JI4	26S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus OX=10090 GN=Psmd6 PE=1 SV=1
Q15008	26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens OX=9606 GN=PSMD6 PE=1 SV=1
Q3T0B2	26S proteasome non-ATPase regulatory subunit 6 OS=Bos taurus OX=9913 GN=PSMD6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005525 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10602 all species →	RPN7	26S proteasome subunit RPN7	Repeat	Interproscan
PF01399 all species →	PCI	PCI domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR045135 all species →	Domain	26S proteasome regulatory subunit Rpn7, N-terminal	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR019585 all species →	Family	26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14145 all species →	26S PROTESOME SUBUNIT 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005838 all species →	Cellular Component	proteasome regulatory particle	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03037	PSMD6, RPN7; 26S proteasome regulatory subunit N7	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.